RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 LRRC8DQ7L1W4 858 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 ZC3HC1Q86WB0 502 aaKnown RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 NKAPQ8N5F7 415 aaKnown RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 DACT3Q96B18 629 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 C19orf60Q96EN9 201 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 DACH2Q96NX9 599 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 SPATA16Q9BXB7 569 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 MRPL9Q9BYD2 267 aaKnown RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 TMEM39AQ9NV64 488 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 CIDEBQ9UHD4 219 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 ACVRL1P37023 503 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 TTPAP49638 278 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 SYTL1Q8IYJ3 562 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 MAB21L3Q8N8X9 362 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 SPPL2BQ8TCT7 592 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 IRGQQ8WZA9 623 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 EBF3Q9H4W6 596 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 BLOC1S6Q9UL45 172 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 MTF2Q9Y483 593 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 DNAJC25-GNG10A0A024R161 153 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 DLX3O60479 287 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 VCLP18206 1134 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 GJA5P36382 358 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 PRIM2P49643 509 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 KCNQ1P51787 676 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 PFKPQ01813 784 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 BLMHQ13867 455 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 ZNF284Q2VY69 593 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 FBXL22Q6P050 247 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 GPRIN3Q6ZVF9 776 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 C14orf80Q86SX3 495 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 P3H2Q8IVL5 708 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 SMG8Q8ND04 991 aaKnown RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 ITFG1Q8TB96 612 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 CDK5RAP1Q96SZ6 601 aaKnown RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 CCSER2Q9H7U1 834 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 PRKAG3Q9UGI9 489 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 PSMD13Q9UNM6 376 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 RAI2Q9Y5P3 530 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 ZFP37Q9Y6Q3 630 aaPredicted RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 LRATO95237 230 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 LYNP07948 512 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 ACTR3P61158 418 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 METTL21CQ5VZV1 264 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 FUT10Q6P4F1 479 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 AFTPHQ6ULP2 937 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 GCNT7Q6ZNI0 430 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 ZNF467Q7Z7K2 595 aaPredicted RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 RALGPS2Q86X27 583 aaPredicted RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 SPPL2CQ8IUH8 684 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 MICU2Q8IYU8 434 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 SELENOMQ8WWX9 145 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 LNPEPQ9UIQ6 1025 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 IQCF5A8MTL0 148 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 GNA12Q03113 381 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 CGB2Q6NT52 195 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 ZNF621Q6ZSS3 439 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 DHRSXQ8N5I4 330 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 NPWQ8N729 165 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 UBR7Q8N806 425 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 SCLYQ96I15 445 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 CEP19Q96LK0 163 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 CORO1BQ9BR76 489 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 SIRPGQ9P1W8 387 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 EVLQ9UI08 416 aaPredicted RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 SLC25A13Q9UJS0 675 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 PRPF19Q9UMS4 504 aaKnown RBP15.68■□□□□ 0.1
CUX1-211ENST00000546411 MYRFQ9Y2G1 1151 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 DOCK2Q92608 1830 aa15.68■□□□□ 0.1
CUX1-211ENST00000546411 MGAT4DA6NG13 374 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 NDST3O95803 873 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PFKMP08237 780 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 IL4RP24394 825 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 THOP1P52888 689 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 CDC16Q13042 620 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PWP1Q13610 501 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PAFAH1B3Q15102 231 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 TCEA2Q15560 299 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 USP41Q3LFD5 358 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 FAM98BQ52LJ0 330 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 MBLAC2Q68D91 279 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 AAGABQ6PD74 315 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 AGMOQ6ZNB7 445 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 ATG16L2Q8NAA4 619 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 OR9I1Q8NGQ6 314 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 DLG3Q92796 817 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 FAM126AQ9BYI3 521 aaPredicted RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 ROGDIQ9GZN7 287 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 EBF2Q9HAK2 575 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 HS3ST4Q9Y661 456 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 C15orf38-AP3S2A0A0A6YYH1 394 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 C5orf58C9J3I9 102 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PTGESO14684 152 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 GPR32O75388 356 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 POU1F1P28069 291 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 ARPINQ7Z6K5 226 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 RNF168Q8IYW5 571 aaPredicted RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 KCTD13Q8WZ19 329 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 RPL10LQ96L21 214 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 DEFB118Q96PH6 123 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms