RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CHERPQ8IWX8 916 aaKnown RBP12.55□□□□□ -0.4
RNF4-222ENST00000541204 DDI1Q8WTU0 396 aa12.55□□□□□ -0.4
RNF4-222ENST00000541204 SLCO4A1Q96BD0 722 aa12.55□□□□□ -0.4
RNF4-222ENST00000541204 PHF21BQ96EK2 531 aa12.55□□□□□ -0.4
RNF4-222ENST00000541204 GPBP1L1Q9HC44 474 aaPredicted RBP12.55□□□□□ -0.4
RNF4-222ENST00000541204 IGSF5Q9NSI5 407 aa12.55□□□□□ -0.4
RNF4-222ENST00000541204 CNOT11Q9UKZ1 510 aaKnown RBP12.55□□□□□ -0.4
RNF4-222ENST00000541204 LRFN2Q9ULH4 789 aa12.55□□□□□ -0.4
RNF4-222ENST00000541204 MOXD2PA6NHM9 499 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 PDLIM1O00151 329 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 PSMD12O00232 456 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 UBDO15205 165 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 PENKP01210 267 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 PYGLP06737 847 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 C8BP07358 591 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 DNAJB1P25685 340 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 SLC5A2P31639 672 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 GEMP55040 296 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 FAM189BP81408 668 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 RHDQ02161 417 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 STX5Q13190 355 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 IKBKEQ14164 716 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TCTN1Q2MV58 587 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TMEM259Q4ZIN3 620 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ZNF789Q5FWF6 425 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 CHSY3Q70JA7 882 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 HERC6Q8IVU3 1022 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 MYO1HQ8N1T3 1032 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 GRIN3AQ8TCU5 1115 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 SCLYQ96I15 445 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ZNF512Q96ME7 567 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 SLC29A1Q99808 456 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 CIB1Q99828 191 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ZYG11BQ9C0D3 744 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 SP110Q9HB58 689 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TMEM161AQ9NX61 479 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TMCO1Q9UM00 188 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TCAF1Q9Y4C2 921 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 SQORQ9Y6N5 450 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 NLRC5Q86WI3 1866 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 A0A087X1B8 175 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 HEATR9A2RTY3 570 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TRIM24O15164 1050 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ALDH2P05091 517 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 DNAJB13P59910 316 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 CREB5Q02930 508 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 TIGD7Q6NT04 549 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 LDB1Q86U70 411 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 CUZD1Q86UP6 607 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 C2CD4AQ8NCU7 369 aaPredicted RBP12.54□□□□□ -0.4
RNF4-222ENST00000541204 TSPAN14Q8NG11 270 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 OR9I1Q8NGQ6 314 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 SLC39A13Q96H72 371 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 FUBP3Q96I24 572 aaKnown RBP eCLIP12.54□□□□□ -0.4
RNF4-222ENST00000541204 C8orf48Q96LL4 319 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ZNF597Q96LX8 424 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 OLFM1Q99784 485 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 PREBQ9HCU5 417 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 FBXO5Q9UKT4 447 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ACTL7AQ9Y615 435 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 CEPT1Q9Y6K0 416 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 THSD7BQ9C0I4 1608 aa12.54□□□□□ -0.4
RNF4-222ENST00000541204 ARHGAP10A1A4S6 786 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 A8MT66 165 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 INPPL1O15357 1258 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 SELPP16109 830 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TSPAN8P19075 237 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 HOXD10P28358 340 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 PSMD8P48556 350 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 POLD2P49005 469 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 KCNQ1P51787 676 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 SQLEQ14534 574 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 IHHQ14623 411 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 GPNMBQ14956 572 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TECRLQ5HYJ1 363 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 MARC1Q5VT66 337 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TTC16Q8NEE8 873 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TMIGD2Q96BF3 282 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 SLC39A3Q9BRY0 314 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TMEM79Q9BSE2 394 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 NOL11Q9H8H0 719 aaKnown RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 MEAF6Q9HAF1 191 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 HMX1Q9NP08 348 aaPredicted RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 SPAG4Q9NPE6 437 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 CREBZFQ9NS37 354 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 MARCH5Q9NX47 278 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 GMPR2Q9P2T1 348 aaKnown RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 ATP6AP2A0A1C7CYW4 349 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 MTMR11A4FU01 709 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 TBKBP1A7MCY6 615 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 ARVCFO00192 962 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 PQBP1O60828 265 aaKnown RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 GPC4O75487 556 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 ATP6AP2O75787 350 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 IPO13O94829 963 aaKnown RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 CDH2P19022 906 aaPredicted RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 ADRA1AP35348 466 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 ACVRL1P37023 503 aa12.53□□□□□ -0.4
RNF4-222ENST00000541204 ATN1P54259 1190 aaPredicted RBP12.53□□□□□ -0.4
RNF4-222ENST00000541204 POU4F1Q01851 419 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms