RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM160A2Q8N612 972 aaPredicted RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 GPR161Q8N6U8 529 aaKnown RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 FRMD1Q8N878 549 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 PPHLN1Q8NEY8 458 aaKnown RBP12.25□□□□□ -0.45
SDC1-206ENST00000482879 OR2T34Q8NGX1 318 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 SPACA7Q96KW9 195 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 SIGLEC10Q96LC7 697 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 RANBP9Q96S59 729 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 FMO2Q99518 471 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 C1QTNF1Q9BXJ1 281 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 PREBQ9HCU5 417 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 SAMD15Q9P1V8 674 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 TCAF1Q9Y4C2 921 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 KCTD3Q9Y597 815 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 ARL5AQ9Y689 179 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 MAD1L1Q9Y6D9 718 aa12.25□□□□□ -0.45
SDC1-206ENST00000482879 A0A1W2PQU0 124 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 MAGEB16A2A368 324 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 CCDC78A2IDD5 438 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 IGLON5A6NGN9 336 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 GOLGA8CPA6NN73 597 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 H0Y858 1186 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 EIF3HO15372 352 aaKnown RBP eCLIP12.24□□□□□ -0.45
SDC1-206ENST00000482879 STX7O15400 261 aaKnown RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 MAP3K13O43283 966 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 LDB2O43679 373 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 BUD23O43709 281 aaKnown RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 LZTS3O60299 673 aaPredicted RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 BANF1O75531 89 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 C1SP09871 688 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 C6P13671 934 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 ECHS1P30084 290 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 STC1P52823 247 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 RPS21P63220 83 aaKnown RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 PDE1BQ01064 536 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 ACOX1Q15067 660 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 HP1BP3Q5SSJ5 553 aaPredicted RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 KIAA1161Q6NSJ0 714 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 CCNI2Q6ZMN8 369 aaPredicted RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 HSD11B1LQ7Z5J1 315 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 HORMAD1Q86X24 394 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 AGGF1Q8N302 714 aaeCLIP12.24□□□□□ -0.45
SDC1-206ENST00000482879 EIF1ADQ8N9N8 165 aaKnown RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 EID2BQ96D98 161 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 GPR174Q9BXC1 333 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 PARD6BQ9BYG5 372 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 BPIFA1Q9NP55 256 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 SAYSD1Q9NPB0 183 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 CHRAC1Q9NRG0 131 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 MBD1Q9UIS9 605 aaPredicted RBP12.24□□□□□ -0.45
SDC1-206ENST00000482879 SOX13Q9UN79 622 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 COQ6Q9Y2Z9 468 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 PKP3Q9Y446 797 aa12.24□□□□□ -0.45
SDC1-206ENST00000482879 MROH6A6NGR9 719 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 E7ESA3 106 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 PSMD11O00231 422 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 TM7SF2O76062 418 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 SP9P0CG40 484 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 MCM3P25205 808 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 TNFRSF8P28908 595 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 HMGCLP35914 325 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ELK3P41970 407 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ZNF140P52738 457 aaPredicted RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 VSNL1P62760 191 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 TMPRSS15P98073 1019 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 CBLBQ13191 982 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 SGCGQ13326 291 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 PTPRCAPQ14761 206 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ANGPT1Q15389 498 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ELF2Q15723 593 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 SKIDA1Q1XH10 827 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 TSTD2Q5T7W7 516 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 SEL1L3Q68CR1 1132 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 WDR93Q6P2C0 686 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 SLC36A4Q6YBV0 504 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 CEP128Q6ZU80 1094 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 NLRP9Q7RTR0 991 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ANKMY2Q8IV38 441 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 IGDCC3Q8IVU1 814 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 GSPT2Q8IYD1 628 aaKnown RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 CBARPQ8N350 705 aaPredicted RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 OR4K2Q8NGD2 314 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 STYXQ8WUJ0 223 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 PTCD2Q8WV60 388 aaKnown RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 KLK6Q92876 244 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 LRRC39Q96DD0 335 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 STAMBPL1Q96FJ0 436 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 EBNA1BP2Q99848 306 aaKnown RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 KIFC1Q9BW19 673 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 FAM126AQ9BYI3 521 aaPredicted RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 TSPYL1Q9H0U9 437 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 C6orf106Q9H6K1 298 aaPredicted RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 MRM3Q9HC36 420 aaKnown RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 PKD2L2Q9NZM6 624 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 IL17CQ9P0M4 197 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 ZFR2Q9UPR6 939 aaKnown RBP12.23□□□□□ -0.45
SDC1-206ENST00000482879 CHMP2BQ9UQN3 213 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 TEX264Q9Y6I9 313 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 PLXNA2O75051 1894 aa12.23□□□□□ -0.45
SDC1-206ENST00000482879 FAM237BA0A1B0GVD1 139 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms