RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SPRP35270 261 aaPredicted RBP8.7□□□□□ -1.02
VPS4B-201ENST00000238497 DGKGP49619 791 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 DPYSQ14117 519 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 RASA2Q15283 850 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF528Q3MIS6 628 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF470Q6ECI4 717 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 RPS27LQ71UM5 84 aaKnown RBP8.7□□□□□ -1.02
VPS4B-201ENST00000238497 ARMCX6Q7L4S7 300 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 ZNF687Q8N1G0 1237 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 ZBTB44Q8NCP5 570 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 SLC2A13Q96QE2 648 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 IER2Q9BTL4 223 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 SUDS3Q9H7L9 328 aaPredicted RBP8.7□□□□□ -1.02
VPS4B-201ENST00000238497 CATSPERBQ9H7T0 1116 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 SNX15Q9NRS6 342 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 RUVBL2Q9Y230 463 aaKnown RBP8.7□□□□□ -1.02
VPS4B-201ENST00000238497 USP3Q9Y6I4 520 aa8.7□□□□□ -1.02
VPS4B-201ENST00000238497 A8MX80 341 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 E9PBE3 544 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 IRAK2O43187 625 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 KLHL41O60662 606 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 ATP6V1G2O95670 118 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 APBB3O95704 486 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 KLKB1P03952 638 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 ALDOAP04075 364 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TPSB2P20231 275 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 DSC2Q02487 901 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SLC10A7Q0GE19 358 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 BNIP1Q12981 228 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TPSAB1Q15661 275 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SNX30Q5VWJ9 437 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 NAPEPLDQ6IQ20 393 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 WDR75Q8IWA0 830 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CCDC117Q8IWD4 279 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TERB1Q8NA31 727 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CFAP61Q8NHU2 1237 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 AGAP11Q8TF27 550 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 EZH1Q92800 747 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 RMDN1Q96DB5 314 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CLPTM1LQ96KA5 538 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 MARK4Q96L34 752 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 THTPAQ9BU02 230 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 MLPHQ9BV36 600 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TBC1D10AQ9BXI6 508 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CACNA2D2Q9NY47 1150 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 HS3ST4Q9Y661 456 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SPAG17Q6Q759 2223 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 UBA6A0AVT1 1052 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 HMX2A2RU54 273 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 K7ESF4 209 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TK2O00142 265 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CFLARO15519 480 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 ALDH1A2O94788 518 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 GP5P40197 560 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SCNN1BP51168 640 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 PRAMEP78395 509 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CREB5Q02930 508 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 GRM3Q14832 879 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 PREPLQ4J6C6 727 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 FAM219BQ5XKK7 198 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 HTR3DQ70Z44 454 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CLNKQ7Z7G1 428 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 LGI2Q8N0V4 545 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 DEFB119Q8N690 84 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 KCTD4Q8WVF5 259 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 C10orf82Q8WW14 230 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 PHF21BQ96EK2 531 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 HMCESQ96FZ2 354 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 OLFM3Q96PB7 478 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 FRMD8Q9BZ67 464 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 POLMQ9NP87 494 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 OLA1Q9NTK5 396 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 AGO1Q9UL18 857 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 COMMD10Q9Y6G5 202 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 ANAPC1Q9H1A4 1944 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 KIF26AQ9ULI4 1882 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TCRBV21S2A2A0A5A6 115 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 K7EQS6 105 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 UNC5CO95185 931 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 AP2A1O95782 977 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 C2P06681 752 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 RALBP11234 206 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 HOXB2P14652 356 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CPA3P15088 417 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SLC1A6P48664 564 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 DHPSP49366 369 aaPredicted RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SERPINB9P50453 376 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CDH17Q12864 832 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 CSHL1Q14406 222 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 LRRC36Q1X8D7 754 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 ACCSLQ4AC99 568 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 USP39Q53GS9 565 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 MARC1Q5VT66 337 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 KIAA1324Q6UXG2 1013 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 LRRC39Q96DD0 335 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TMA16Q96EY4 203 aaKnown RBP8.69□□□□□ -1.02
VPS4B-201ENST00000238497 TEKT5Q96M29 485 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SMOC1Q9H4F8 434 aa8.69□□□□□ -1.02
VPS4B-201ENST00000238497 SARS2Q9NP81 518 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms