RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ISG20Q96AZ6 181 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 LRRC45Q96CN5 670 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SNF8Q96H20 258 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 EXOC2Q96KP1 924 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 RBM15Q96T37 977 aaKnown RBP eCLIP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ACOX2Q99424 681 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SEMA3CQ99985 751 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 PARD6BQ9BYG5 372 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 TRIM4Q9C037 500 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SLC25A51Q9H1U9 297 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 NEUROG2Q9H2A3 272 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 TNKS2Q9H2K2 1166 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 MTG2Q9H4K7 406 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 NOD2Q9HC29 1040 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ZDHHC18Q9NUE0 388 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 UBP1Q9NZI7 540 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 WHRNQ9P202 907 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 THAP10Q9P2Z0 257 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 RSPH14Q9UHP6 348 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SLC25A13Q9UJS0 675 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 WASH3PC4AMC7 463 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TLX3O43711 291 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CBFA2T3O75081 653 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 UTP20O75691 2785 aaKnown RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 NEBLO76041 1014 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 SYPP08247 313 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 MYBL2P10244 700 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 HNRNPLP14866 589 aaKnown RBP eCLIP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 DRD1P21728 446 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CES1P23141 567 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 GKP32189 559 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ADRA1AP35348 466 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 HSPA9P38646 679 aaKnown RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CD86P42081 329 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 GRIA1P42261 906 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CSNK1DP48730 415 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 SCNN1BP51168 640 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 RHOAP61586 193 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 VSNL1P62760 191 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 OLIG2Q13516 323 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ENPP2Q13822 863 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 SPARCL1Q14515 664 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ZNF234Q14588 700 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ACCSLQ4AC99 568 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 FBXO43Q4G163 708 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CARD16Q5EG05 197 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 SPDYCQ5MJ68 293 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PEAR1Q5VY43 1037 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 IZUMO3Q5VZ72 239 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 EGFLAMQ63HQ2 1017 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ANO7Q6IWH7 933 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 C22orf39Q6P5X5 142 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 NCEH1Q6PIU2 408 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 KDELC1Q6UW63 502 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 SRLQ86TD4 932 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 METTL3Q86U44 580 aaKnown RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PPIL6Q8IXY8 311 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PLPP6Q8IY26 295 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 IFT20Q8IY31 132 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 BBS5Q8N3I7 341 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 OR2A12Q8NGT7 310 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 IFT81Q8WYA0 676 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PRCCQ92733 491 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PTPRN2Q92932 1015 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 MRGPRX2Q96LB1 330 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PWWP2AQ96N64 755 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 NUDCD1Q96RS6 583 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TM6SF2Q9BZW4 377 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 CEP44Q9C0F1 390 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 POLR1EQ9GZS1 481 aaKnown RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TMEM245Q9H330 911 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ZDHHC4Q9NPG8 344 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 FAM114A2Q9NRY5 505 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 ANAPC5Q9UJX4 755 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 RAB21Q9UL25 225 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 PLA2G4CQ9UP65 541 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TTLL3Q9Y4R7 772 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 MUC22E2RYF6 1773 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 KIAA1549LQ6ZVL6 1849 aa9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TNRC6BQ9UPQ9 1833 aaKnown RBP9.52□□□□□ -0.89
TRIM28-208ENST00000597172 TMEM63AO94886 807 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 SUN1O94901 812 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 AP2A1O95782 977 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 GSRP00390 522 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 AGTP01019 485 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 PRLP01236 227 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 ATXN1LP0C7T5 689 aaKnown RBP9.51□□□□□ -0.89
TRIM28-208ENST00000597172 TPSB2P20231 275 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 TNFRSF8P28908 595 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 TIE1P35590 1138 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 PLTPP55058 493 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 SEC13P55735 322 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 BASP1P80723 227 aaKnown RBP9.51□□□□□ -0.89
TRIM28-208ENST00000597172 SEMG2Q02383 582 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 PRPSAP1Q14558 356 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 TPSAB1Q15661 275 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 MYLK3Q32MK0 819 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 C2orf27AQ580R0 203 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 C9orf64Q5T6V5 341 aa9.51□□□□□ -0.89
TRIM28-208ENST00000597172 WDR93Q6P2C0 686 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms