RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 IL12RB2Q99665 862 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 LGR4Q9BXB1 951 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 SLC13A1Q9BZW2 595 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 NRSN2Q9GZP1 204 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 NHEJ1Q9H9Q4 299 aaPredicted RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 USP29Q9HBJ7 922 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 MRPL40Q9NQ50 206 aaKnown RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 KLQ9UEF7 1012 aa13.09□□□□□ -0.31
LIG1-212ENST00000596549 ANKRD11Q6UB99 2663 aaPredicted RBP13.09□□□□□ -0.31
LIG1-212ENST00000596549 YY2O15391 372 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 AKR1B10O60218 316 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 MTA2O94776 668 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 RASGRP1O95267 797 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PGLSO95336 258 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 HLA-DQB2P05538 268 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PDHA1P08559 390 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 ALPIP09923 528 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 DUSP3P51452 185 aaPredicted RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 SRP54P61011 504 aaKnown RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 POLR2LP62875 67 aaKnown RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 E2F1Q01094 437 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 DSC2Q02487 901 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 SLC10A2Q12908 348 aaPredicted RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 TBX2Q13207 712 aaPredicted RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 MESDQ14696 234 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PDK2Q15119 407 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 KIF26BQ2KJY2 2108 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 COL28A1Q2UY09 1125 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 RALGPS1Q5JS13 557 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 EFL1Q7Z2Z2 1120 aaKnown RBP13.08□□□□□ -0.32
LIG1-212ENST00000596549 HSD11B1LQ7Z5J1 315 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 BBS5Q8N3I7 341 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PAF1Q8N7H5 531 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PLD5Q8N7P1 536 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 KYQ8NBH2 561 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 KCTD6Q8NC69 237 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 SLC35G2Q8TBE7 412 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 PIH1D2Q8WWB5 315 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 OR1E3Q8WZA6 343 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 HDAC11Q96DB2 347 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 NUS1Q96E22 293 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 SEMA3CQ99985 751 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 DTLQ9NZJ0 730 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 LHX6Q9UPM6 363 aa13.08□□□□□ -0.32
LIG1-212ENST00000596549 A0A087WV48 116 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 A0A1W2PQ67 120 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 CPED1A4D0V7 1026 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 C3orf70A6NLC5 250 aaPredicted RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 MATN3O15232 486 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 BRINP1O60477 761 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 ANXA6P08133 673 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 KRT7P08729 469 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 CTPS1P17812 591 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 KDELR1P24390 212 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 HTR1BP28222 390 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 TRIM23P36406 574 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 ETV3P41162 512 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 BLKP51451 505 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 PDX1P52945 283 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 ACOX1Q15067 660 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 NR0B2Q15466 257 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 IFI16Q16666 785 aaKnown RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 FAM182AQ5T1J6 154 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 TIGD7Q6NT04 549 aaPredicted RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 C19orf48Q6RUI8 117 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 LRRC49Q8IUZ0 686 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 CBARPQ8N350 705 aaPredicted RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 OR56A4Q8NGH8 313 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 ARRDC2Q8TBH0 407 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 MAPK15Q8TD08 544 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 NSMCE1Q8WV22 266 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 FATE1Q969F0 183 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 DTD2Q96FN9 168 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 CRELD1Q96HD1 420 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 TSGA13Q96PP4 275 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 RBM15Q96T37 977 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG1-212ENST00000596549 TDRD1Q9BXT4 1180 aaKnown RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 POLR1EQ9GZS1 481 aaKnown RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 WDR26Q9H7D7 661 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 LCMT1Q9UIC8 334 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 RABGEF1Q9UJ41 708 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 PHTF1Q9UMS5 762 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 PPIL1Q9Y3C6 166 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 RAI2Q9Y5P3 530 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 DGKBQ9Y6T7 804 aa13.07□□□□□ -0.32
LIG1-212ENST00000596549 ZNF106Q9H2Y7 1883 aaKnown RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 ARHGEF17Q96PE2 2063 aaPredicted RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 DSPP15924 2871 aaKnown RBP13.07□□□□□ -0.32
LIG1-212ENST00000596549 ATRXP46100 2492 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 NBEAQ8NFP9 2946 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 ACACAQ13085 2346 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 A0A1W2PNU3 283 aaPredicted RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 LRRD1A4D1F6 860 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 PSMD11O00231 422 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 CACNB4O00305 520 aaPredicted RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 CSO75390 466 aaKnown RBP13.06□□□□□ -0.32
LIG1-212ENST00000596549 SOD1P00441 154 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 CCNCP24863 283 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 NIPAL4Q0D2K0 466 aa13.06□□□□□ -0.32
LIG1-212ENST00000596549 ZBTB17Q13105 803 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms