RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRPC5OSA6NMA1 111 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 HIDE1A8MVS5 230 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GNGT2O14610 69 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ANXA5P08758 320 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MYOGP15173 224 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MDH1P40925 334 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 GRIA2P42262 883 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 CCNG1P51959 295 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 USP46P62068 366 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 SKP1P63208 163 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MBTPS1Q14703 1052 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 CAPRIN2Q6IMN6 1127 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 BRAT1Q6PJG6 821 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 BEND5Q7L4P6 421 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 WDTC1Q8N5D0 677 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 TMEM174Q8WUU8 243 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 FCRL5Q96RD9 977 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 NDEL1Q9GZM8 345 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 BTBD1Q9H0C5 482 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 IGSF9Q9P2J2 1179 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ADAM21Q9UKJ8 722 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ECM29Q5VYK3 1845 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 hCG_2014768A0A024R1R8 64 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ABLIM1O14639 778 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ANGPT2O15123 496 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PHGDHO43175 533 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 CNTN5O94779 1100 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MT-CYBP00156 380 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 PCCBP05166 539 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 IDSP22304 550 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ABCG1P45844 678 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 SLC10A7Q0GE19 358 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MSANTD2Q6P1R3 559 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 KLHL35Q6PF15 583 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 DRICH1Q6PGQ1 229 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 ZNF783Q6ZMS7 281 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 RAVER1Q8IY67 606 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 ZBP1Q9H171 429 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MARCH5Q9NX47 278 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 FBXL12Q9NXK8 326 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 AHSPQ9NZD4 102 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 FER1L6Q2WGJ9 1857 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PRRC2BQ5JSZ5 2229 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 KAT7O95251 611 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ALOX15P16050 662 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 EPB42P16452 691 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GRK2P25098 689 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 DHPSP49366 369 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 CCNHP51946 323 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 WASHC5Q12768 1159 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PHKG1Q16816 387 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 FAM133BQ5BKY9 247 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 XKR4Q5GH76 650 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 NCBP2-AS2Q69YL0 99 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 C22orf39Q6P5X5 142 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PRR23BQ6ZRT6 265 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 CAMK1DQ8IU85 385 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GALNT13Q8IUC8 556 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 FAM9CQ8IZT9 166 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 STAG3L4Q8TBR4 150 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 SLC26A7Q8TE54 656 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ART4Q93070 314 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ABCG4Q9H172 646 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ANKZF1Q9H8Y5 726 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PARVBQ9HBI1 364 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GULP1Q9UBP9 304 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PIAS3Q9Y6X2 628 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MEFVO15553 781 aaPredicted RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 ADAM12O43184 909 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 KDELR3O43731 214 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PCNAP12004 261 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 SLC2A4P14672 509 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GYS2P54840 703 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 GUCY1A3Q02108 690 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MYLK3Q32MK0 819 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 CCDC153Q494R4 210 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 RALGPS1Q5JS13 557 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 TXNRD3NBQ6F5E7 133 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ANO7Q6IWH7 933 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 C14orf80Q86SX3 495 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 PIP4K2CQ8TBX8 421 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ZFYVE19Q96K21 471 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 MRPL40Q9NQ50 206 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 HCFC1R1Q9NWW0 138 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 SCOCQ9UIL1 159 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 EIF3LQ9Y262 564 aaKnown RBP9.86□□□□□ -0.83
LIG3-216ENST00000593099 ASF1AQ9Y294 204 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 ENO4A6NNW6 628 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SEC24AO95486 1093 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 MAPK1P28482 360 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 BLKP51451 505 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SLC25A11Q02978 314 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 CACNG1Q06432 222 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 ANKRD20A4Q4UJ75 823 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 USP39Q53GS9 565 aaKnown RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 N4BP2L1Q5TBK1 243 aaPredicted RBP9.85□□□□□ -0.83
LIG3-216ENST00000593099 ZNF852Q6ZMS4 543 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 CPNE8Q86YQ8 564 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 GPR65Q8IYL9 337 aa9.85□□□□□ -0.83
LIG3-216ENST00000593099 SIX5Q8N196 739 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms