RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ZNF395Q9H8N7 513 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 ARL8BQ9NVJ2 186 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-204ENST00000585740 SMPD4Q9NXE4 827 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 XPR1Q9UBH6 696 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 MARCOQ9UEW3 520 aaPredicted RBP11.3□□□□□ -0.6
LIG3-204ENST00000585740 LZTS1Q9Y250 596 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 RAI2Q9Y5P3 530 aa11.3□□□□□ -0.6
LIG3-204ENST00000585740 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 TTC24A2A3L6 582 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 CCDC162PA2VCL2 907 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 SOBPA7XYQ1 873 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ZBBXA8MT70 800 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 CHUKO15111 745 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ATP6V1G2O95670 118 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 PENKP01210 267 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 CKMP06732 381 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 C8AP07357 584 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 KRT16P08779 473 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 LPOP22079 712 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 GLDCP23378 1020 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ITGB8P26012 769 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 PMLP29590 882 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ARSDP51689 593 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 MNAT1P51948 309 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ZNF140P52738 457 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 RHOAP61586 193 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 AP1S1P61966 158 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TYSND1Q2T9J0 566 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 FSCBQ5H9T9 825 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TECRLQ5HYJ1 363 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 C9orf50Q5SZB4 431 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 RBM20Q5T481 1227 aaKnown RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 METTL21CQ5VZV1 264 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TXNDC8Q6A555 127 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 PIWIL4Q7Z3Z4 852 aaKnown RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 TMC7Q7Z402 723 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 GLT6D1Q7Z4J2 308 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TMCO2Q7Z6W1 182 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 ALYREFQ86V81 257 aaKnown RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 LONP2Q86WA8 852 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TMC8Q8IU68 726 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 TDRD5Q8NAT2 981 aaKnown RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 HEXDCQ8WVB3 486 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ACDQ96AP0 544 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 CDKN2AIPNLQ96HQ2 116 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 FAR2Q96K12 515 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 CNDP1Q96KN2 507 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 C19orf43Q9BQ61 176 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 FEM1AQ9BSK4 669 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 C2orf49Q9BVC5 232 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 TBC1D10AQ9BXI6 508 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 MMADHCQ9H3L0 296 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 GPAMQ9HCL2 828 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 ASAH2Q9NR71 780 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 IGSF5Q9NSI5 407 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 PNPOQ9NVS9 261 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 NCKIPSDQ9NZQ3 722 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 KIAA1522Q9P206 1035 aaPredicted RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 CPSF2Q9P2I0 782 aaKnown RBP11.29□□□□□ -0.6
LIG3-204ENST00000585740 TAGLN3Q9UI15 199 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 VPS28Q9UK41 221 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 STK38LQ9Y2H1 464 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 RWDD3Q9Y3V2 267 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 IRAK3Q9Y616 596 aa11.29□□□□□ -0.6
LIG3-204ENST00000585740 CCDC189A1A4V9 331 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 CAPN14A8MX76 684 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 SPECC1L-ADORA2AF8WAN1 911 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 TK2O00142 265 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 GYG2O15488 501 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 DLX3O60479 287 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 GREM1O60565 184 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 WISP3O95389 354 aaPredicted RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 GLUD1P00367 558 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 CYBBP04839 570 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 F7P08709 466 aaPredicted RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 AOC1P19801 751 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 FDXRP22570 491 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 PRDX6P30041 224 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 CSKP41240 450 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 RGRP47804 291 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 GRIA4P48058 902 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 CSNK1DP48730 415 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 IDH3AP50213 366 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 RPL14P50914 215 aaKnown RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 SUOXP51687 545 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 STC1P52823 247 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 RPL26P61254 145 aaKnown RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 PFKPQ01813 784 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 CSHL1Q14406 222 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 HSF5Q4G112 596 aaPredicted RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 DNAL1Q4LDG9 190 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 TJAP1Q5JTD0 557 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 AARS2Q5JTZ9 985 aaKnown RBP11.28□□□□□ -0.6
LIG3-204ENST00000585740 WASHC2DQ5SRD0 308 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 EPGNQ6UW88 154 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 OTOP2Q7RTS6 562 aa11.28□□□□□ -0.6
LIG3-204ENST00000585740 MFN1Q8IWA4 741 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms