RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MRPL40Q9NQ50 206 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 PIH1D3Q9NQM4 214 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 FAM114A2Q9NRY5 505 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 DDX28Q9NUL7 540 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 LMBRD1Q9NUN5 540 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 NUDT15Q9NV35 164 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SLC17A6Q9P2U8 582 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TRIM10Q9UDY6 481 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SLC13A4Q9UKG4 626 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ARHGAP26Q9UNA1 814 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 MTUS2Q5JR59 1369 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 A0A1W2PPL8 197 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 K7ERQ8 282 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 IFIT3O14879 490 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 PQBP1O60828 265 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 LUC7L3O95232 432 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 MATN4O95460 622 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 KRT6AP02538 564 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 OPN1LWP04000 364 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 KRT6BP04259 564 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GNAI2P04899 355 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ALDH2P05091 517 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GLAP06280 429 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ANXA6P08133 673 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 DHRS4L1P0CG22 281 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 TYRP14679 529 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 PTPN2P17706 415 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 IL11P20809 199 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CNTFP26441 200 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CD38P28907 300 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 TKTP29401 623 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 HMOX2P30519 316 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 IL6STP40189 918 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 WNT5AP41221 380 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 POU3F4P49335 361 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GNAQP50148 359 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ZNF135P52742 658 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 NXPH1P58417 271 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 YBEYP58557 167 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 GMFBP60983 142 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 YWHAZP63104 245 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 MC2RQ01718 297 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 PRKCEQ02156 737 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 YWHAHQ04917 246 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 PRKCZQ05513 592 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ENPEPQ07075 957 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ACTN3Q08043 901 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 TCF15Q12870 199 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ARHGAP19Q14CB8 494 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ZMYND11Q15326 602 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ALX1Q15699 326 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 FAM76BQ5HYJ3 339 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 C1orf141Q5JVX7 400 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 C1orf185Q5T7R7 199 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 DEPDC1Q5TB30 811 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 WDR93Q6P2C0 686 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 SARM1Q6SZW1 724 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 PTF1AQ7RTS3 328 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 PSTKQ8IV42 348 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 FAM98AQ8NCA5 519 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 TRPV1Q8NER1 839 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ATP8B4Q8TF62 1192 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 TMIGD2Q96BF3 282 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 FBXL20Q96IG2 436 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 TMEM68Q96MH6 324 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 AIFM3Q96NN9 605 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CAMK1GQ96NX5 476 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 FAM111AQ96PZ2 611 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CCDC77Q9BR77 488 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ERP44Q9BS26 406 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 NTMT1Q9BV86 223 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CINPQ9BW66 212 aaPredicted RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 CDK19Q9BWU1 502 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GBA3Q9H227 469 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 JMJD4Q9H9V9 463 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 SPACA1Q9HBV2 294 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 VCX3AQ9NNX9 186 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 SLAMF7Q9NQ25 335 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ITM2CQ9NQX7 267 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 AGPAT3Q9NRZ7 376 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ZBTB40Q9NUA8 1239 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 PNPOQ9NVS9 261 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 THAP1Q9NVV9 213 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 EURLQ9NYK6 297 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GGA3Q9NZ52 723 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 CYTH4Q9UIA0 394 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 GAB2Q9UQC2 676 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 NUDCQ9Y266 331 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 DLGAP4Q9Y2H0 992 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 SPATA31A6Q5VVP1 1343 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 TTC21AQ8NDW8 1320 aa5.18□□□□□ -1.58
VPS35-205ENST00000563984 ATXN2Q99700 1313 aaKnown RBP5.18□□□□□ -1.58
VPS35-205ENST00000563984 ANKRD30AQ9BXX3 1397 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PDS5BQ9NTI5 1447 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 F5H697 171 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 TRIAP1O43715 76 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 GATCO43716 136 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 SLC25A17O43808 307 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SUPT3HO75486 399 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 GGPS1O95749 300 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms