RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	SERHL2	Q9H4I8	314 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	SERHL	Q9NQF3	203 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	RNASEH2A	O75792	299 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	FLT3	P36888	993 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CLCNKB	P51801	687 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	NR1H2	P55055	460 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PLA2G4E	Q3MJ16	856 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PARP15	Q460N3	678 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	HYI	Q5T013	277 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	STRADA	Q7RTN6	431 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	MRPL57	Q9BQC6	102 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	NIFK	Q9BYG3	293 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	BCLAF3	A2AJT9	711 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	EPHB6	O15197	1021 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PPP1R11	O60927	126 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	NBN	O60934	754 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	AVIL	O75366	819 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	FGR	P09769	529 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	ATP6V0D1	P61421	351 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	RPL38	P63173	70 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	KCNJ2	P63252	427 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CTBP1	Q13363	440 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	TXNDC11	Q6PKC3	985 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CDYL2	Q8N8U2	506 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	MOSPD2	Q8NHP6	518 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CAPSL	Q8WWF8	208 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	RIPOR3	Q96MK2	946 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	MYL12B	O14950	172 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	SYN3	O14994	580 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	ERAL1	O75616	437 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CDH3	P22223	829 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	NUP62	P37198	522 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	ARSH	Q5FYA8	562 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	LCLAT1	Q6UWP7	414 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	S100A13	Q99584	98 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	SPATA5L1	Q9BVQ7	753 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	TTLL2	Q9BWV7	592 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	POLR1B	Q9H9Y6	1135 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PCYOX1	Q9UHG3	505 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CHKB	Q9Y259	395 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447		A0A0G2JLL6	359 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	FAM237A	A0A1B0GTK4	181 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	UGT2B4	P06133	528 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	CYP3A5	P20815	502 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	DRD4	P21917	467 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	GRIA4	P48058	902 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PURA	Q00577	322 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	ELP6	Q0PNE2	266 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	TTC27	Q6P3X3	843 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	GPR135	Q8IZ08	494 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	SVOP	Q8N4V2	548 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	JOSD2	Q8TAC2	188 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	ING5	Q8WYH8	240 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	EBNA1BP2	Q99848	306 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PCDH18	Q9HCL0	1135 aa		13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	DUS2	Q9NX74	493 aa	Known RBP	13.18	□□□□□ -0.3
PTPRF-215	ENST00000496447	PAPSS1	O43252	624 aa	Predicted RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	TAS2R40	P59535	323 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ERVK-21	P61565	698 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	POTEH	Q6S545	545 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	APTX	Q7Z2E3	356 aa	Known RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ZNF605	Q86T29	641 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	CEP44	Q9C0F1	390 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	KCNK4	Q9NYG8	393 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	FBXO5	Q9UKT4	447 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	NDRG2	Q9UN36	371 aa	Known RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ANGPT4	Q9Y264	503 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ATRN	O75882	1429 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	CA12	O43570	354 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	BANF1	O75531	89 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	TSHR	P16473	764 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	MARCKSL1	P49006	195 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	NET1	Q7Z628	596 aa	Predicted RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	OR52K2	Q8NGK3	314 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	OR6Y1	Q8NGX8	325 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ROBO3	Q96MS0	1386 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	AGO3	Q9H9G7	860 aa	Known RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	MRPS33	Q9Y291	106 aa	Known RBP	13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	LYVE1	Q9Y5Y7	322 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	CILP	O75339	1184 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ATP6V1G1	O75348	118 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	SNHG28	P0DPA3	235 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	NR2F1	P10589	423 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	PTPN2	P17706	415 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ICAM3	P32942	547 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ZNF618	Q5T7W0	954 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	MTMR14	Q8NCE2	650 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	OR52L1	Q8NGH7	329 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	P2RY11	Q96G91	374 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	LRRC19	Q9H756	370 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	BTRC	Q9Y297	605 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	SLC9A8	Q9Y2E8	581 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	TBC1D30	Q9Y2I9	924 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	NEURL4	Q96JN8	1562 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	BCL9L	Q86UU0	1499 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	ARL5C	A6NH57	179 aa		13.17	□□□□□ -0.3
PTPRF-215	ENST00000496447	BTNL10	A8MVZ5	291 aa		13.17	□□□□□ -0.3

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