RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 CYS1Q717R9 158 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ZC3HC1Q86WB0 502 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 DDIASQ8IXT1 998 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SLC15A3Q8IY34 581 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 TMEM151AQ8N4L1 468 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 DHRSXQ8N5I4 330 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 CPSF7Q8N684 471 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SLC2A14Q8TDB8 520 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 HDAC10Q969S8 669 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 OSBPL2Q9H1P3 480 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SUCOQ9UBS9 1254 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 MID2Q9UJV3 735 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 TRPC5OSA6NMA1 111 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PPP6CO00743 305 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 FZD6O60353 706 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SLC4A1P02730 911 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PGK2P07205 417 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 C8BP07358 591 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ERCC2P18074 760 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 BDNFP23560 247 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 RAD23AP54725 363 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 FKBP1AP62942 108 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 RBP5P82980 135 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ADIGQ0VDE8 80 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 TSTD2Q5T7W7 516 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SYPL2Q5VXT5 272 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PPP4R4Q6NUP7 873 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SLC35F5Q8WV83 523 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 C18orf25Q96B23 403 aaPredicted RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 VPS28Q9UK41 221 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 USP22Q9UPT9 525 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PTGES3LE9PB15 166 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 LSM1O15116 133 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 HUS1O60921 280 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 XYLBO75191 536 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PMPCBO75439 489 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 MAGP20916 626 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PSMA4P25789 261 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 RCVRNP35243 200 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 IREB2P48200 963 aaKnown RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 MLLT10P55197 1068 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 TNK2Q07912 1038 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 NFATC3Q12968 1075 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ZBTB17Q13105 803 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ZNF362Q5T0B9 420 aaPredicted RBP9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ZNF470Q6ECI4 717 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SCIMPQ6UWF3 145 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ERMP1Q7Z2K6 904 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 CUZD1Q86UP6 607 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 EXOC8Q8IYI6 725 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 SLC7A14Q8TBB6 771 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 STYXQ8WUJ0 223 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 CASP10Q92851 521 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ACDQ96AP0 544 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 HDAC11Q96DB2 347 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 EXD2Q9NVH0 621 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 PCDH10Q9P2E7 1040 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 ADAM28Q9UKQ2 775 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 NME7Q9Y5B8 376 aa9.92□□□□□ -0.82
PTCHD4-202ENST00000398738 H3BMM5 538 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 NME4O00746 187 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 DLGAP1O14490 977 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 OXSR1O95747 527 aaPredicted RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 ADH1CP00326 375 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 BACE1P56817 501 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 GRM1Q13255 1194 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 PCSK7Q16549 785 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 RABL3Q5HYI8 236 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 NOMO2Q5JPE7 1267 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 RBM20Q5T481 1227 aaKnown RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 ABRAXAS1Q6UWZ7 409 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 NANOGNBQ7Z5D8 188 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 TMEM135Q86UB9 458 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 MFSD6LQ8IWD5 586 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 ANKRD52Q8NB46 1076 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 VPS33AQ96AX1 596 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 MLPHQ9BV36 600 aaPredicted RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 C2orf49Q9BVC5 232 aaPredicted RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 BRD8Q9H0E9 1235 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 SNX25Q9H3E2 840 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 R3HDMLQ9H3Y0 253 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 ZNF385DQ9H6B1 395 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 CYP3A43Q9HB55 503 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 PKD2L2Q9NZM6 624 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 IFT80Q9P2H3 777 aaPredicted RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 CNOT11Q9UKZ1 510 aaKnown RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 TRIP11Q15643 1979 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 TCRBV3S1A0A5B6 114 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 SLCO1B7G3V0H7 640 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 H2AFYO75367 372 aaKnown RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 RSL1D1O76021 490 aaKnown RBP9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 IL18RAPO95256 599 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 AP2A1O95782 977 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 NAB1Q13506 487 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 TMEM110Q86TL2 294 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 IGFN1Q86VF2 1251 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 C3orf30Q96M34 536 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 CCDC138Q96M89 665 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 GLT1D1Q96MS3 346 aa9.91□□□□□ -0.82
PTCHD4-202ENST00000398738 RNF145Q96MT1 663 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms