RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 HOXC4P09017 264 aaPredicted RBP21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 TPM1P09493 284 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 ALPIP09923 528 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 CTSEP14091 401 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 NFKBIAP25963 317 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 VIPR1P32241 457 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 TRIM23P36406 574 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 RPIAP49247 311 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 ACOX1Q15067 660 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 CNGA3Q16281 694 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 ESRP1Q6NXG1 681 aaKnown RBP21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 LVRNQ6Q4G3 990 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 RD3Q7Z3Z2 195 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 MAP7D3Q8IWC1 876 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 SDR16C5Q8N3Y7 309 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 MAML1Q92585 1016 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 FUBP1Q96AE4 644 aaKnown RBP21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 CHP1Q99653 195 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 NT5MQ9NPB1 228 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 PCDHB1Q9Y5F3 818 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 DGKBQ9Y6T7 804 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 ADAMTS20P59510 1910 aa21.76■■□□□ 1.07
CCDC28B-201ENST00000373602 ASXL3Q9C0F0 2248 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 LRP4O75096 1905 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 CACNB4O00305 520 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 HEXIM1O94992 359 aaKnown RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 CYP2A6P11509 494 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 TGM2P21980 687 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 ARMC12Q5T9G4 340 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 KCTD16Q68DU8 428 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 TIGD7Q6NT04 549 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 CBARPQ8N350 705 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 PQLC3Q8N755 202 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 RNF214Q8ND24 703 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 TPCN2Q8NHX9 752 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 HNRNPLLQ8WVV9 542 aaKnown RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 SCG3Q8WXD2 468 aaKnown RBP21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 NAT6Q93015 286 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 FATE1Q969F0 183 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 TSGA13Q96PP4 275 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 KCTD5Q9NXV2 234 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 DOLKQ9UPQ8 538 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 PPIL1Q9Y3C6 166 aa21.75■■□□□ 1.07
CCDC28B-201ENST00000373602 TMEM202A6NGA9 273 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 MATN3O15232 486 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 TNFP01375 233 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 CCNCP24863 283 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 IFI16Q16666 785 aaKnown RBP21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 COL28A1Q2UY09 1125 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PERM1Q5SV97 790 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 ALG1LQ6GMV1 187 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PNCKQ6P2M8 343 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 GKN2Q86XP6 184 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PELI3Q8N2H9 469 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 OR56A4Q8NGH8 313 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 SLC35G2Q8TBE7 412 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PIH1D2Q8WWB5 315 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 OR1E3Q8WZA6 343 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 NUS1Q96E22 293 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 SCRN2Q96FV2 425 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PDXPQ96GD0 296 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 MCCC1Q96RQ3 725 aaPredicted RBP21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 RBM15Q96T37 977 aaKnown RBP eCLIP21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 SEMA3CQ99985 751 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 POLR1EQ9GZS1 481 aaKnown RBP21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 NHEJ1Q9H9Q4 299 aaPredicted RBP21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 PADI4Q9UM07 663 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 RAI2Q9Y5P3 530 aa21.74■■□□□ 1.07
CCDC28B-201ENST00000373602 TNFRSF10CO14798 259 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 TLX3O43711 291 aaPredicted RBP21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 FZD6O60353 706 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 BRINP1O60477 761 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 CSO75390 466 aaKnown RBP21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 MAP3K6O95382 1288 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 LHCGRP22888 699 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 KELP23276 732 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 KDELR1P24390 212 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 ITKQ08881 620 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 MESDQ14696 234 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 ARL10Q8N8L6 244 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 RAPGEF5Q92565 580 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 CCDC42Q96M95 316 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 WDR26Q9H7D7 661 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 FGF22Q9HCT0 170 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 SPTLC3Q9NUV7 552 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 AMACRQ9UHK6 382 aa21.73■■□□□ 1.07
CCDC28B-201ENST00000373602 NPIPB15A6NHN6 443 aaPredicted RBP21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 PSMD11O00231 422 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 MTA2O94776 668 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 MX2P20592 715 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 CES1P23141 567 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 ARHGAP25P42331 645 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 GBE1Q04446 702 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 ISXQ2M1V0 245 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 ZFYVE27Q5T4F4 411 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 USP45Q70EL2 814 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 HSD11B1LQ7Z5J1 315 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 DTD2Q96FN9 168 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 RNF157Q96PX1 679 aa21.72■■□□□ 1.07
CCDC28B-201ENST00000373602 LGR4Q9BXB1 951 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms