RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GLYATL1P3A0A0U1RQE8 302 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 C2orf71A6NGG8 1288 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HIDE1A8MVS5 230 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 GDI1P31150 447 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SPAM1P38567 509 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PDCD2Q16342 344 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 KLHL32Q96NJ5 620 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 CDCA3Q99618 268 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 CRISPLD1Q9H336 500 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SUV39H2Q9H5I1 410 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 RIC8BQ9NVN3 520 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HEY2Q9UBP5 337 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 FAM159BA6NKW6 160 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 QSOX1O00391 747 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PKMP14618 531 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ATP5F1P24539 256 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 MTHFRP42898 656 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PLK1P53350 603 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 AQP5P55064 265 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ELP6Q0PNE2 266 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HOMEZQ8IX15 550 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TRMT61BQ9BVS5 477 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ALG9Q9H6U8 611 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SSU72Q9NP77 194 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HCFC1R1Q9NWW0 138 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 FBXL21Q9UKT6 434 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 CORO1CQ9ULV4 474 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HCFC2Q9Y5Z7 792 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 DRGXA6NNA5 263 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 SKAP2O75563 359 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 GOT2P00505 430 aaKnown RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 COL6A2P12110 1019 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 CRHR1P34998 444 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 GPR1P46091 355 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 NAGLUP54802 743 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 AGAP2Q99490 1192 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 MRPL57Q9BQC6 102 aaKnown RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 ZNF334Q9HCZ1 680 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 SLC17A7Q9P2U7 560 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 ZNF646O15015 1829 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 MYO1DO94832 1006 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 WASP42768 502 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 CACNG1Q06432 222 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 LMAN2Q12907 356 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 HECTD2Q5U5R9 776 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 FSTL4Q6MZW2 842 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 GPSM1Q86YR5 675 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 DENND6AQ8IWF6 608 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 CYP4X1Q8N118 509 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 GDPD5Q8WTR4 605 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 SPOCK2Q92563 424 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 RNF38Q9H0F5 515 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 XPR1Q9UBH6 696 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 FKBPLQ9UIM3 349 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 PLLPQ9Y342 182 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 FOXO6A8MYZ6 492 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 BIRC5O15392 142 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 ENO1P06733 434 aaKnown RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 OGNP20774 298 aaKnown RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 ATP6V0D1P61421 351 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 C22orf39Q6P5X5 142 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 LDB1Q86U70 411 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 TRAPPC5Q8IUR0 188 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 IGDCC3Q8IVU1 814 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 SPDYE1Q8NFV5 336 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-201ENST00000254950 SMARCD2Q92925 531 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 PCDHB1Q9Y5F3 818 aa11.61□□□□□ -0.55
VPS4A-201ENST00000254950 ANKRD66B4E2M5 251 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 H0YGN5 161 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 KPNA5O15131 536 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 KDM1AO60341 852 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CYP2A7P20853 494 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 PRKCHP24723 683 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CCNHP51946 323 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 SLC7A9P82251 487 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 HSPA14Q0VDF9 509 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 RASA2Q15283 850 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 RAET1GQ6H3X3 334 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 KIAA1324Q6UXG2 1013 aaKnown RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 Q6ZVU0 165 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 ARHGAP12Q8IWW6 846 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CNTD1Q8N815 330 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 RDH11Q8TC12 318 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 MCOLN3Q8TDD5 553 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 KIFC1Q9BW19 673 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 FAM126AQ9BYI3 521 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 EBF3Q9H4W6 596 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 ZNF711Q9Y462 761 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 NFS1Q9Y697 457 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CASP8AP2Q9UKL3 1982 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CCDC162PA2VCL2 907 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CFAP73A6NFT4 308 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 PRAMEF1O95521 474 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 MAGEA10P43363 369 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 GRIA4P48058 902 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 BST1Q10588 318 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 LRRC8EQ6NSJ5 796 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CD300LGQ6UXG3 332 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 LCA5Q86VQ0 697 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 UNC5BQ8IZJ1 945 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms