RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FAM171BQ6P995 826 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 CYHR1Q6ZMK1 362 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 CILP2Q8IUL8 1156 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 THEM5Q8N1Q8 247 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 SEPT5Q99719 369 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 C1orf50Q9BV19 199 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 AKTIPQ9H8T0 292 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 BPIFA1Q9NP55 256 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 ENPP3O14638 875 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 CASQ2O14958 399 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TBX4P57082 545 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 POU4F1Q01851 419 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 DNAJB14Q8TBM8 379 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 GIPC2Q8TF65 315 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TUBGCP3Q96CW5 907 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TMEM79Q9BSE2 394 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 PRDM16Q9HAZ2 1276 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 EPS15L1Q9UBC2 864 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TRIM38O00635 465 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 PIP5K1BO14986 540 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 GOT2P00505 430 aaKnown RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 MTHFD1P11586 935 aaKnown RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 PCSK6P29122 969 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 CTGFP29279 349 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 PRDX3P30048 256 aaKnown RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 FMO4P31512 558 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 PLOD1Q02809 727 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TAF2Q6P1X5 1199 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 C2orf69Q8N8R5 385 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 ZFP28Q8NHY6 868 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 KATNAL1Q9BW62 490 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 SENP6Q9GZR1 1112 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 GSTO2Q9H4Y5 243 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 HEATR9A2RTY3 570 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 GLTPD2A6NH11 291 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 TRIM25Q14258 630 aaKnown RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 PCBP1Q15365 356 aaKnown RBP eCLIP21.35■■□□□ 1.018e-11■■■■□ 25.9
TRIM28-201ENST00000253024 OR4D1Q15615 310 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 FBXL22Q6P050 247 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 KLHDC10Q6PID8 442 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 KDELC1Q6UW63 502 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 ISCA2Q86U28 154 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 SLC12A8A0AV02 714 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 BAIAP3O94812 1187 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 SNRPB2P08579 225 aaKnown RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 OR1E1P30953 314 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 PRKAA2P54646 552 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 DIO3P55073 304 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 MLLT6P55198 1093 aaPredicted RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 RPS6KA2Q15349 733 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 RALGAPA2Q2PPJ7 1873 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 MS4A13Q5J8X5 152 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 KIAA0930Q6ICG6 404 aaPredicted RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 CPSF7Q8N684 471 aaKnown RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 GALPQ9UBC7 116 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 EVLQ9UI08 416 aaPredicted RBP21.35■■□□□ 1.01
TRIM28-201ENST00000253024 RAD54BQ9Y620 910 aa21.35■■□□□ 1.01
TRIM28-201ENST00000253024 GNAO1P09471 354 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 BMP1P13497 986 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 HADHAP40939 763 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 CSRP3P50461 194 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 ZNF157P51786 506 aaPredicted RBP21.34■■□□□ 1.01
TRIM28-201ENST00000253024 MAPK10P53779 464 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 ZNF549Q6P9A3 640 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 TMEM102Q8N9M5 508 aaPredicted RBP21.34■■□□□ 1.01
TRIM28-201ENST00000253024 SLCO4A1Q96BD0 722 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 TSGA13Q96PP4 275 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 CDK15Q96Q40 435 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 ACOX2Q99424 681 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 CCDC162PA2VCL2 907 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 SUPT3HB4E1H0 165 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 FOXD2O60548 495 aaPredicted RBP21.34■■□□□ 1.01
TRIM28-201ENST00000253024 SUPT3HO75486 399 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 AGTR2P50052 363 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 FUNDC1Q8IVP5 155 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 CNTN4Q8IWV2 1026 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 C19orf60Q96EN9 201 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 RRN3Q9NYV6 651 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 DNAJC15Q9Y5T4 150 aa21.34■■□□□ 1.01
TRIM28-201ENST00000253024 A0A087X1B8 175 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 ARHGEF37A1IGU5 675 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 VILLO15195 856 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 CRCPO75575 148 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 MMP2P08253 660 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 FAM58BPP0C7Q3 252 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 ATP6V1B2P21281 511 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 KCNQ1P51787 676 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 UNC50Q53HI1 259 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 KRT80Q6KB66 452 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 EFHBQ8N7U6 833 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 RMDN1Q96DB5 314 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 CCDC28BQ9BUN5 200 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 IKZF3Q9UKT9 509 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 A0A0J9YYE9 177 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 PRSS51A0A1B0GVH4 220 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 NRP2O60462 931 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 S1PR4O95977 384 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 GATMP50440 423 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 PFKPQ01813 784 aa21.33■■□□□ 1.01
TRIM28-201ENST00000253024 LRP8Q14114 963 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms