RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 ERAP2Q6P179 960 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 ZDHHC24Q6UX98 284 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 USP45Q70EL2 814 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 ZNF534Q76KX8 674 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 C1orf210Q8IVY1 113 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 DTWD2Q8NBA8 298 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 MDGA1Q8NFP4 955 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 BRSK1Q8TDC3 778 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 GANCQ8TET4 914 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 IFT81Q8WYA0 676 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 SERPINB12Q96P63 405 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 MCCC1Q96RQ3 725 aaPredicted RBP12.37□□□□□ -0.43
LINC00339-213ENST00000642137 KDM4CQ9H3R0 1056 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 TRABDQ9H4I3 376 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 ANKZF1Q9H8Y5 726 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 PRMT8Q9NR22 394 aaPredicted RBP12.37□□□□□ -0.43
LINC00339-213ENST00000642137 FADS3Q9Y5Q0 445 aa12.37□□□□□ -0.43
LINC00339-213ENST00000642137 MAGEB16A2A368 324 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 SDR42E2A6NKP2 422 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 GOLGA8MH3BSY2 632 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 PLK4O00444 970 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 TSPAN6O43657 245 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 TUBBP07437 444 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ZNF30P17039 623 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 TPH1P17752 444 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 CTPS1P17812 591 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ADRA1DP25100 572 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 VIPR1P32241 457 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ABL2P42684 1182 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 MAGEA3P43357 314 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 CARSP49589 748 aaKnown RBP12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ARL4CP56559 192 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 FAM193AP78312 1265 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 LAMB3Q13751 1172 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 CDKN3Q16667 212 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 AGBL4Q5VU57 503 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 NEK5Q6P3R8 708 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 RAVER1Q8IY67 606 aaKnown RBP12.36□□□□□ -0.43
LINC00339-213ENST00000642137 PDIK1LQ8N165 341 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 CBARPQ8N350 705 aaPredicted RBP12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ZCCHC9Q8N567 271 aaKnown RBP12.36□□□□□ -0.43
LINC00339-213ENST00000642137 GPR161Q8N6U8 529 aaKnown RBP12.36□□□□□ -0.43
LINC00339-213ENST00000642137 FBXO25Q8TCJ0 367 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 RANBP9Q96S59 729 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 BTBD1Q9H0C5 482 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 TSPYL1Q9H0U9 437 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 SGK2Q9HBY8 427 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 PCDH12Q9NPG4 1184 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 ZDHHC18Q9NUE0 388 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 SERGEFQ9UGK8 458 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 FBXO4Q9UKT5 387 aa12.36□□□□□ -0.43
LINC00339-213ENST00000642137 CAPN8A6NHC0 703 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 PRR33A8MZF0 331 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 H0Y858 1186 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 AXIN1O15169 862 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 EIF3HO15372 352 aaKnown RBP eCLIP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 PLRG1O43660 514 aaKnown RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 ALPIP09923 528 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 TDGF1P13385 188 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 MCM3P25205 808 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 TNFRSF8P28908 595 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 NUBP1P53384 320 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 SESN2P58004 480 aaPredicted RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 TAS2R38P59533 333 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 PDE1BQ01064 536 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 TAF1AQ15573 450 aaPredicted RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 PCID2Q5JVF3 399 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 FNBP1LQ5T0N5 605 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CERCAMQ5T4B2 595 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 WDR93Q6P2C0 686 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CRTC1Q6UUV9 634 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CCNI2Q6ZMN8 369 aaPredicted RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CEP128Q6ZU80 1094 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 DPPA4Q7L190 304 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 TMC3Q7Z5M5 1100 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CACUL1Q86Y37 369 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 MAML2Q8IZL2 1156 aaPredicted RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 OR14C36Q8NHC7 312 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 LRRC39Q96DD0 335 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 SIGLEC10Q96LC7 697 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 C19orf43Q9BQ61 176 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 PHACTR1Q9C0D0 580 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 IL22Q9GZX6 179 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 EPC1Q9H2F5 836 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 C11orf16Q9NQ32 467 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 WSB2Q9NYS7 404 aaPredicted RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 B4GALT6Q9UBX8 382 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 MTRF1LQ9UGC7 380 aaKnown RBP12.35□□□□□ -0.43
LINC00339-213ENST00000642137 RIMKLBQ9ULI2 386 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 SPO11Q9Y5K1 396 aa12.35□□□□□ -0.43
LINC00339-213ENST00000642137 CACNA1IQ9P0X4 2223 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 NPIPB15A6NHN6 443 aaPredicted RBP12.34□□□□□ -0.43
LINC00339-213ENST00000642137 E7ESA3 106 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PSMD11O00231 422 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 AVILO75366 819 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CLDN7O95471 211 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 CRTAMO95727 393 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 PRKCGP05129 697 aa12.34□□□□□ -0.43
LINC00339-213ENST00000642137 MGAT1P26572 445 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms