RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RHOQP17081 205 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 ALDH4A1P30038 563 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 GPR3P46089 330 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 LIG3P49916 1009 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 LIMK2P53671 638 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 RHOAP61586 193 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 NRG1Q02297 640 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 BIRC2Q13490 618 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 UGP2Q16851 508 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 DCAF12Q5T6F0 453 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 MANEALQ5VSG8 457 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 HIST2H2BCQ6DN03 193 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 RWDD4Q6NW29 188 aaKnown RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 GJB7Q6PEY0 223 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 TRIM65Q6PJ69 517 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 LEKR1Q6ZMV7 388 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 BNIPLQ7Z465 357 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 NLRP14Q86W24 1093 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 C17orf82Q86X59 251 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 OR4D9Q8NGE8 314 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 SHC3Q92529 594 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 FUBP1Q96AE4 644 aaKnown RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 TEFMQ96QE5 360 aaKnown RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 DPYSL5Q9BPU6 564 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 NCAPGQ9BPX3 1015 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 TMEM168Q9H0V1 697 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 PCDH12Q9NPG4 1184 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 MRPL40Q9NQ50 206 aaKnown RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 NDFIP2Q9NV92 336 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 TMEM248Q9NWD8 314 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 SLC39A1Q9NY26 324 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 KCNK4Q9NYG8 393 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 APEX2Q9UBZ4 518 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 OR12D3Q9UGF7 316 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 DNAI1Q9UI46 699 aa10.19□□□□□ -0.78
TRIM28-210ENST00000597618 HOOK1Q9UJC3 728 aaKnown RBP10.19□□□□□ -0.78
TRIM28-210ENST00000597618 LRRK1Q38SD2 2015 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 DOCK4Q8N1I0 1966 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 TSPAN11A1L157 253 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 B4E171 279 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 BUB1O43683 1085 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 KDELR3O43731 214 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 DUX1O43812 170 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 HOXC4P09017 264 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 THRAP10827 490 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CD44P16070 742 aaKnown RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 MAP4P27816 1152 aaKnown RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CD1CP29017 333 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 MAN1A1P33908 653 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 FLT3P36888 993 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 MMP12P39900 470 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 TSPAN7P41732 249 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 STAT1P42224 750 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 GABRB2P47870 512 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 MAZP56270 477 aaKnown RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 MC1RQ01726 317 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 GRM3Q14832 879 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 INO80DQ53TQ3 878 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CFAP58Q5T655 872 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 KLHL10Q6JEL2 608 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 FAM129CQ86XR2 697 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 ZNF354CQ86Y25 554 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 NLGN4XQ8N0W4 816 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 FMR1NBQ8N0W7 255 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 PLA2G15Q8NCC3 412 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 TMEM35BQ8NCS4 154 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 NLGN4YQ8NFZ3 816 aaPredicted RBP10.18□□□□□ -0.78
TRIM28-210ENST00000597618 ZDHHC1Q8WTX9 485 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 NELFBQ8WX92 580 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CFAP57Q96MR6 1250 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CRACR2AQ9BSW2 395 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 WDR26Q9H7D7 661 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 CYP4F12Q9HCS2 524 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 PILRAQ9UKJ1 303 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 ATP8A1Q9Y2Q0 1164 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 DAAM1Q9Y4D1 1078 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 ATP6V1DQ9Y5K8 247 aa10.18□□□□□ -0.78
TRIM28-210ENST00000597618 PRSS38A1L453 326 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 CFAP69A5D8W1 941 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 PDE2AO00408 941 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-210ENST00000597618 VPS4BO75351 444 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 PIGNO95427 931 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 KRT7P08729 469 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 CCNB1P14635 433 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 OAS2P29728 719 aaKnown RBP10.17□□□□□ -0.78
TRIM28-210ENST00000597618 COPB1P53618 953 aaKnown RBP10.17□□□□□ -0.78
TRIM28-210ENST00000597618 ILF3Q12906 894 aaKnown RBP eCLIP10.17□□□□□ -0.78
TRIM28-210ENST00000597618 SQSTM1Q13501 440 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 PEX6Q13608 980 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 DEFB109BQ30KR1 87 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 CRTC2Q53ET0 693 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-210ENST00000597618 FHL5Q5TD97 284 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 BRAT1Q6PJG6 821 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 ARCQ7LC44 396 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 SLC47A2Q86VL8 602 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 XYLT1Q86Y38 959 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 DNAAF5Q86Y56 855 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 NRSN1Q8IZ57 195 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 TEX19Q8NA77 164 aa10.17□□□□□ -0.78
TRIM28-210ENST00000597618 CCL4L1Q8NHW4 92 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms