RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CCL4	P13236	92 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	TIMP2	P16035	220 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	RHOQ	P17081	205 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	CDH5	P33151	784 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	GPR3	P46089	330 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	ARSD	P51689	593 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	RNASE9	P60153	205 aa	Known RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	PEX6	Q13608	980 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	SEPT6	Q14141	434 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	TCEA2	Q15560	299 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	CRTC2	Q53ET0	693 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	LACTB2	Q53H82	288 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	INO80D	Q53TQ3	878 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	NLRP14	Q86W24	1093 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	FAM131B	Q86XD5	332 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	MSANTD4	Q8NCY6	345 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	AGBL5	Q8NDL9	886 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	KIAA1143	Q96AT1	154 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	DPEP2	Q9H4A9	486 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	RDH14	Q9HBH5	336 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	TMPRSS4	Q9NRS4	437 aa		12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	USP9Y	O00507	2555 aa	Predicted RBP	12.51	□□□□□ -0.41
CAPN1-223	ENST00000533079	IGHV5-10-1	A0A0J9YXX1	117 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	GOLGA6L19	H0YKK7	550 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	KDELR3	O43731	214 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	RAD1	O60671	282 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	PCCB	P05166	539 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	FGF3	P11487	239 aa	Predicted RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	ERCC5	P28715	1186 aa	Predicted RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	MAN1A1	P33908	653 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	FLT3	P36888	993 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	MMP12	P39900	470 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	STAT1	P42224	750 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	LIMK2	P53671	638 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	RHOA	P61586	193 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	MC1R	Q01726	317 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	CDC20	Q12834	499 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	KLRB1	Q12918	225 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	UGP2	Q16851	508 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	ARHGAP44	Q17R89	818 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	BRAT1	Q6PJG6	821 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	LUZP1	Q86V48	1076 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	C17orf82	Q86X59	251 aa	Predicted RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	TMEM35B	Q8NCS4	154 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	OR4D9	Q8NGE8	314 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	APOBEC4	Q8WW27	367 aa	Known RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	JPH3	Q8WXH2	748 aa	Predicted RBP	12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	OR1E3	Q8WZA6	343 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	HMCES	Q96FZ2	354 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	CCDC74B	Q96LY2	380 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	NCAPG	Q9BPX3	1015 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	FGF22	Q9HCT0	170 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	OR12D3	Q9UGF7	316 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	MAN1B1	Q9UKM7	699 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	COQ6	Q9Y2Z9	468 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	SDK2	Q58EX2	2172 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	UNC79	Q9P2D8	2635 aa		12.5	□□□□□ -0.41
CAPN1-223	ENST00000533079	UTP20	O75691	2785 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	LRRK1	Q38SD2	2015 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	GTPBP10	A4D1E9	387 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	RHPN2P1	A8MT19	583 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079		B4E171	279 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	PDE2A	O00408	941 aa	Predicted RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	FGFR1OP	O95684	399 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	THRA	P10827	490 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	CD44	P16070	742 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	MAP4	P27816	1152 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	CSTF2	P33240	577 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	TSPAN7	P41732	249 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	BPIFB4	P59827	614 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	SQSTM1	Q13501	440 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	DPCR1	Q3MIW9	517 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	CFAP58	Q5T655	872 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	DCAF12	Q5T6F0	453 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	RWDD4	Q6NW29	188 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	XYLT1	Q86Y38	959 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	DNAAF5	Q86Y56	855 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	RCBTB1	Q8NDN9	531 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	NELFB	Q8WX92	580 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	FUBP1	Q96AE4	644 aa	Known RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	C18orf8	Q96DM3	657 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	ABHD17A	Q96GS6	310 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	CFAP57	Q96MR6	1250 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	ZNF641	Q96N77	438 aa	Predicted RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	NUDT22	Q9BRQ3	303 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	GPN2	Q9H9Y4	310 aa	Predicted RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	PCDH12	Q9NPG4	1184 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	NDFIP2	Q9NV92	336 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	PLEKHB1	Q9UF11	243 aa	Predicted RBP	12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	DNAI1	Q9UI46	699 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	NEU3	Q9UQ49	428 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	B3GALT1	Q9Y5Z6	326 aa		12.49	□□□□□ -0.41
CAPN1-223	ENST00000533079	PRSS38	A1L453	326 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	TMEM202	A6NGA9	273 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	AGRP	O00253	132 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	B4GAT1	O43505	415 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	BUB1	O43683	1085 aa		12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	LSM8	O95777	96 aa	Known RBP	12.48	□□□□□ -0.41
CAPN1-223	ENST00000533079	CCNB1	P14635	433 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms