RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 BTG3Q14201 252 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 PIGHQ14442 188 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 POLD3Q15054 466 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 SIX1Q15475 284 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 ADRM1Q16186 407 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PDCD2Q16342 344 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 CCDC14Q49A88 953 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 KCNT1Q5JUK3 1230 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 WDR45BQ5MNZ6 344 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 KAZNQ674X7 775 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MFSD5Q6N075 450 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 C8orf74Q6P047 294 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 CFAP161Q6P656 301 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 FBXO38Q6PIJ6 1188 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MFSD7Q6UXD7 560 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ZNF365Q70YC5 407 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SLC26A9Q7LBE3 791 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 DTX1Q86Y01 620 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SLC13A5Q86YT5 568 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 SCN4BQ8IWT1 228 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TRIM48Q8IWZ4 208 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RHOT1Q8IXI2 618 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 GSPT2Q8IYD1 628 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 KATNAL2Q8IYT4 538 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TDHQ8IZJ6 230 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 DEFB106AQ8N104 65 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SIX6OS1Q8N1H7 587 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 MMGT1Q8N4V1 131 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TMEM199Q8N511 208 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TTC9BQ8N6N2 239 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 NIPA2Q8N8Q9 360 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ATAD1Q8NBU5 361 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 HIPK4Q8NE63 616 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 SCAMP5Q8TAC9 235 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 NETO1Q8TDF5 533 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 FNIP1Q8TF40 1166 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 FAM172AQ8WUF8 416 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 HDAC7Q8WUI4 952 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ZFPM2Q8WW38 1151 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RSAD2Q8WXG1 361 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RAPGEF5Q92565 580 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 HSPH1Q92598 858 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 BADQ92934 168 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 KIAA1191Q96A73 305 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RPGRIP1Q96KN7 1286 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PEBP4Q96S96 227 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 FOXB1Q99853 325 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 FAM118BQ9BPY3 351 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TMEM175Q9BSA9 504 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 CNPY3Q9BT09 278 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 LRRC1Q9BTT6 524 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 HEMGNQ9BXL5 484 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PARD6BQ9BYG5 372 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 BTBD1Q9H0C5 482 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ZCWPW1Q9H0M4 648 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 VPS11Q9H270 941 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RMI1Q9H9A7 625 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 LRRC4Q9HBW1 653 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 LRRC4CQ9HCJ2 640 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ARFGAP3Q9NP61 516 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 IL23AQ9NPF7 189 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 PCMTD2Q9NV79 361 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ASNSD1Q9NWL6 643 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 COMMD8Q9NX08 183 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 COX16Q9P0S2 106 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 RNF14Q9UBS8 474 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 XPO7Q9UIA9 1087 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 SCOCQ9UIL1 159 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 TTC7AQ9ULT0 858 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 ZMYND8Q9ULU4 1186 aaPredicted RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 LRCH1Q9Y2L9 728 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 ZNF106Q9H2Y7 1883 aaKnown RBP4.28□□□□□ -1.72
CD44-226ENST00000527889 NCOR2Q9Y618 2525 aa4.28□□□□□ -1.72
CD44-226ENST00000527889 KNL1Q8NG31 2342 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 A0A088AWK7 358 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 GOLGA6L10A0A0M3HER8 536 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MTMR11A4FU01 709 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 C3orf70A6NLC5 250 aaPredicted RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 YJEFN3A6XGL0 299 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 RHPN2P1A8MT19 583 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PRSS47A8MTI9 375 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 E7ENQ6 273 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 KPNA5O15131 536 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TTI1O43156 1089 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 ADAM12O43184 909 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TRAPPC3O43617 180 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PRPSAP2O60256 369 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 TLR5O60602 858 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 HSF2BPO75031 334 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 PHF2O75151 1096 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 RNF8O76064 485 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 SEC31AO94979 1220 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 HEXIM1O94992 359 aaKnown RBP4.27□□□□□ -1.73
CD44-226ENST00000527889 OAZ2O95190 189 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 CSPG5O95196 566 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 VNN2O95498 520 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 MPIG6BO95866 241 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 FYNP06241 537 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 GLI1P08151 1106 aa4.27□□□□□ -1.73
CD44-226ENST00000527889 KRT7P08729 469 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms