RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 SGSHP51688 502 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 BCAT1P54687 386 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 JAM2P57087 298 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 BST2Q10589 180 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 CUL2Q13617 745 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 HLA-BQ31612 363 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 MPPE1Q53F39 396 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 MPP7Q5T2T1 576 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 PIK3R6Q5UE93 754 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 ANKRD40Q6AI12 368 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 MSANTD2Q6P1R3 559 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 LCLAT1Q6UWP7 414 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 RSRC2Q7L4I2 434 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 CISD2Q8N5K1 135 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 STPG3Q8N7X2 389 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 CCDC150Q8NCX0 1101 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 WFIKKN2Q8TEU8 576 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 TFAP2BQ92481 460 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 PRCCQ92733 491 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 SLC35C1Q96A29 364 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 CCDC47Q96A33 483 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 AZIN2Q96A70 460 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 TTC17Q96AE7 1141 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 TMA16Q96EY4 203 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 MAGEB10Q96LZ2 347 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 ZSWIM1Q9BR11 485 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 SCAND2PQ9GZW5 306 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 C6orf106Q9H6K1 298 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 GAREM1Q9H706 876 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 MMRN2Q9H8L6 949 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 PRSS16Q9NQE7 514 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 CNGB3Q9NQW8 809 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 ABCC13Q9NSE7 274 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 OLA1Q9NTK5 396 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 EIF2B4Q9UI10 523 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 TSPAN16Q9UKR8 245 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 ACACAQ13085 2346 aa6.6□□□□□ -1.35
PRPF40A-210ENST00000489741 A0A1B0GVT2 93 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 FAM90A27PA6NNH2 459 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 KCNK3O14649 394 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 PAPSS1O43252 624 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 FYNP06241 537 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 HSP90AA1P07900 732 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 PAEPP09466 180 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 DLDP09622 509 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 EPB41P11171 864 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 HLA-EP13747 358 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 MATKP42679 507 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 CSNK1EP49674 416 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 SLC8A3P57103 927 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 DAOAP59103 153 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 RPS14P62263 151 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 FKBP3Q00688 224 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 ZBTB16Q05516 673 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 DBPQ10586 325 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 SCAPQ12770 1279 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 NFATC3Q12968 1075 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 CNGA2Q16280 664 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 GOLGA7BQ2TAP0 167 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 SPATS1Q496A3 300 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 FAM133BQ5BKY9 247 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 KCNT1Q5JUK3 1230 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 PMF1Q6P1K2 205 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 IL27RAQ6UWB1 636 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 SERPINA13PQ6UXR4 307 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 KBTBD2Q8IY47 623 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 KLHL36Q8N4N3 616 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 ZCCHC9Q8N567 271 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 PNPLA1Q8N8W4 532 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 ENGASEQ8NFI3 743 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 NUDT10Q8NFP7 164 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 FIBINQ8TAL6 211 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 LMO3Q8TAP4 145 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 UBA3Q8TBC4 463 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 WFDC5Q8TCV5 224 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 IRGQQ8WZA9 623 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 MYEOVQ96EZ4 313 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 NUDT11Q96G61 164 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 HSFY1Q96LI6 401 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 GSDMAQ96QA5 445 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 TACO1Q9BSH4 297 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 CIPCQ9C0C6 399 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 LRRC4Q9HBW1 653 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 TM7SF3Q9NS93 570 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 ABCB8Q9NUT2 735 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 DKK4Q9UBT3 224 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 CNOT11Q9UKZ1 510 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 INTS6Q9UL03 887 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 PLA2G4CQ9UP65 541 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 KNTC1P50748 2209 aa6.59□□□□□ -1.35
PRPF40A-210ENST00000489741 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 GOLGA6L7A0A1B0GV03 622 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 PRAMEF25A6NGN4 478 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 MEI4A8MW99 385 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 ZNF561-AS1K7EIQ3 104 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 FLRT2O43155 660 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 IRAK2O43187 625 aa6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 MSI1O43347 362 aaKnown RBP6.58□□□□□ -1.36
PRPF40A-210ENST00000489741 PCDHGA12O60330 932 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms