RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 PAAF1Q9BRP4 392 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 MEAF6Q9HAF1 191 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CLK4Q9HAZ1 481 aaKnown RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 TIMMDC1Q9NPL8 285 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CNOT11Q9UKZ1 510 aaKnown RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 VWA7Q9Y334 891 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 SMIM35A0A1B0GVV1 85 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 MATN3O15232 486 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 SIX3O95343 332 aaPredicted RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 ATP6V1B2P21281 511 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CASP2P42575 452 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 LHX1P48742 406 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 ESRRGP62508 458 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 PFKPQ01813 784 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CACNB2Q08289 660 aaPredicted RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 TRAP1Q12931 704 aaKnown RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 TFAP2DQ7Z6R9 452 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 RETREG3Q86VR2 466 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 PCYOX1LQ8NBM8 494 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 SH3RF2Q8TEC5 729 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 MYLPFQ96A32 169 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 PABPC5Q96DU9 382 aaKnown RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CCDC126Q96EE4 140 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 FCRL2Q96LA5 508 aaPredicted RBP7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 MRGPRX2Q96LB1 330 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 KLHL5Q96PQ7 755 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 KATNBL1Q9H079 304 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 AKTIPQ9H8T0 292 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 NT5MQ9NPB1 228 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 RRN3Q9NYV6 651 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 CD300AQ9UGN4 299 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 V9GYQ6 96 aa7.56□□□□□ -1.2
SMARCC1-202ENST00000425518 A0A0J9YYE9 177 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TCRBV3S1A0A5B6 114 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 LRRC14BA6NHZ5 514 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CAPNS1P04632 268 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 AXLP30530 894 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CDK9P50750 372 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 LPIN1Q14693 890 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 USP41Q3LFD5 358 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 C6orf10Q5SRN2 563 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 KIAA0930Q6ICG6 404 aaPredicted RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 GPR141Q7Z602 305 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 FUNDC1Q8IVP5 155 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 FIBCD1Q8N539 461 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 OR2T34Q8NGX1 318 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 OR2T3Q8NH03 318 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 HDAC10Q969S8 669 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 PGAP3Q96FM1 320 aaPredicted RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 SMARCD1Q96GM5 515 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TSGA13Q96PP4 275 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 RANBP9Q96S59 729 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 PIF1Q9H611 641 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 ZNF408Q9H9D4 720 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 ADARB2Q9NS39 739 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 DNAAF2Q9NVR5 837 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TMEM181Q9P2C4 612 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 IPO11Q9UI26 975 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 PADI4Q9UM07 663 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 KCTD3Q9Y597 815 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CENPFP49454 3210 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CEP350Q5VT06 3117 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 LTBP3Q9NS15 1303 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 RBM47A0AV96 593 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 ANGPT2O15123 496 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 MYL3P08590 195 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 IL10P22301 178 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 POLD2P49005 469 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 FUT11Q495W5 492 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 BORAQ6PGQ7 559 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 RANBP10Q6VN20 620 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 ERI1Q8IV48 349 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 C3orf58Q8NDZ4 430 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TTC16Q8NEE8 873 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 NLGN2Q8NFZ4 835 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TUBGCP3Q96CW5 907 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 C19orf60Q96EN9 201 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 SLC10A4Q96EP9 437 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TCF12Q99081 682 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 IL12RB2Q99665 862 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TINF2Q9BSI4 451 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 MID1IP1Q9NPA3 183 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 TREX1Q9NSU2 369 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 DUS2Q9NX74 493 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 MIOSQ9NXC5 875 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 BTRCQ9Y297 605 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 SHROOM3Q8TF72 1996 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 MT-ND1P03886 318 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 HNRNPCP07910 306 aaKnown RBP eCLIP7.55□□□□□ -1.23e-6■■□□□ 11.4
SMARCC1-202ENST00000425518 ALDOCP09972 364 aaKnown RBP7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 GJA5P36382 358 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CD86P42081 329 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 CDKN2DP55273 166 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 BEX3Q00994 111 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 MFSD10Q14728 455 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 PTPRCAPQ14761 206 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 C16orf72Q14CZ0 275 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 PSMD5Q16401 504 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 XKR4Q5GH76 650 aa7.55□□□□□ -1.2
SMARCC1-202ENST00000425518 NHSL2Q5HYW2 709 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms