RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SEC13P55735 322 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 EIF3BP55884 814 aaKnown RBP15.55■□□□□ 0.08
UPF1-206ENST00000598471 CRADDP78560 199 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 MRPS21P82921 87 aaKnown RBP15.55■□□□□ 0.08
UPF1-206ENST00000598471 PRKCQQ04759 706 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 IFFO1Q0D2I5 559 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 SLC29A2Q14542 456 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 SPANXN3Q5MJ09 141 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 FSTL4Q6MZW2 842 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 BRAT1Q6PJG6 821 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 CAPN12Q6ZSI9 719 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 AGGF1Q8N302 714 aaeCLIP15.55■□□□□ 0.08
UPF1-206ENST00000598471 ZNF366Q8N895 744 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 BLOC1S5Q8TDH9 187 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 HCAR2Q8TDS4 363 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 WDR83Q9BRX9 315 aaKnown RBP15.55■□□□□ 0.08
UPF1-206ENST00000598471 FUT8Q9BYC5 575 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 LRRC4CQ9HCJ2 640 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 CACNA2D2Q9NY47 1150 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 PHTF1Q9UMS5 762 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 WASF2Q9Y6W5 498 aa15.55■□□□□ 0.08
UPF1-206ENST00000598471 C1QTNF3-AMACRE9PGA6 284 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 SYNCRIPO60506 623 aaKnown RBP15.54■□□□□ 0.08
UPF1-206ENST00000598471 LEFTY1O75610 366 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 USP1O94782 785 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 CRTAMO95727 393 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 PDHA1P08559 390 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 PAMP19021 973 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 NTSR1P30989 418 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 TIE1P35590 1138 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 KIR2DL1P43626 348 aaPredicted RBP15.54■□□□□ 0.08
UPF1-206ENST00000598471 ENPP2Q13822 863 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 STARD3Q14849 445 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 QPCTQ16769 361 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 ARSIQ5FYB1 569 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 C9orf64Q5T6V5 341 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 STEAP4Q687X5 459 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 PKN3Q6P5Z2 889 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 LRIG3Q6UXM1 1119 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 ZNF852Q6ZMS4 543 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 UNC5AQ6ZN44 842 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 C3orf62Q6ZUJ4 267 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 USP45Q70EL2 814 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 CROCCP2Q86T23 111 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 IGDCC3Q8IVU1 814 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 STK40Q8N2I9 435 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 TMIEQ8NEW7 156 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 GSDMBQ8TAX9 411 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 SPOCK2Q92563 424 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 ZNF669Q96BR6 464 aaPredicted RBP15.54■□□□□ 0.08
UPF1-206ENST00000598471 ECHDC3Q96DC8 303 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 PPP1R16AQ96I34 528 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 KLHL32Q96NJ5 620 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 KIFC1Q9BW19 673 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 TRABDQ9H4I3 376 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 FBRSQ9HAH7 460 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.54■□□□□ 0.08
UPF1-206ENST00000598471 DKK3Q9UBP4 350 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 FBXL21Q9UKT6 434 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 PLAAQ9Y263 795 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 MRPS17Q9Y2R5 130 aaKnown RBP15.54■□□□□ 0.08
UPF1-206ENST00000598471 RPS6KL1Q9Y6S9 549 aa15.54■□□□□ 0.08
UPF1-206ENST00000598471 RNASEH1O60930 286 aaKnown RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 PAPSS2O95340 614 aaPredicted RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 XPAP23025 273 aaPredicted RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 SSTR1P30872 391 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 GPX6P59796 221 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 PDE1BQ01064 536 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 STAT4Q14765 748 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 CRYMQ14894 314 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 KLHL38Q2WGJ6 581 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 HSF5Q4G112 596 aaPredicted RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 ZNF805Q5CZA5 627 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 EMC10Q5UCC4 262 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 FAM46CQ5VWP2 391 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 GLT6D1Q7Z4J2 308 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 TMEM135Q86UB9 458 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.53■□□□□ 0.08
UPF1-206ENST00000598471 UHMK1Q8TAS1 419 aaKnown RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 BRSK1Q8TDC3 778 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 PIH1D2Q8WWB5 315 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 EZH1Q92800 747 aaPredicted RBP15.53■□□□□ 0.08
UPF1-206ENST00000598471 SHDQ96IW2 340 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 PKNOX2Q96KN3 472 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 ACOX2Q99424 681 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 EPB41L4BQ9H329 900 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 MTG2Q9H4K7 406 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 DYRK4Q9NR20 520 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 ARHGEF3Q9NR81 526 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 ZNF446Q9NWS9 450 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 C5orf42Q9H799 3197 aa15.53■□□□□ 0.08
UPF1-206ENST00000598471 A0A0J9YYE9 177 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 TSPAN11A1L157 253 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 CAPN8A6NHC0 703 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 C2orf81A6NN90 581 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 KPNA3O00505 521 aaPredicted RBP15.52■□□□□ 0.08
UPF1-206ENST00000598471 MAP2K7O14733 419 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 TRBC1P01850 177 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 WASP42768 502 aa15.52■□□□□ 0.08
UPF1-206ENST00000598471 FRG1Q14331 258 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms