RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CXorf51AA0A1B0GTR3 108 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 ILVBLA1L0T0 632 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 UGT2B4P06133 528 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 NEFLP07196 543 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 TIMP2P16035 220 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 GKP32189 559 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 MAZP56270 477 aaKnown RBP18.21■□□□□ 0.51
CLK3-227ENST00000570296 INPP5AQ14642 412 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 CEACAM20Q6UY09 585 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 TMEM110Q86TL2 294 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 RYBPQ8N488 228 aaPredicted RBP18.21■□□□□ 0.51
CLK3-227ENST00000570296 OR6K2Q8NGY2 324 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 OR1E3Q8WZA6 343 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 SLC2A13Q96QE2 648 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 SPON2Q9BUD6 331 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 SIK2Q9H0K1 926 aa18.21■□□□□ 0.51
CLK3-227ENST00000570296 E5RJQ4 531 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 RNF225M0QZC1 329 aaPredicted RBP18.2■□□□□ 0.5
CLK3-227ENST00000570296 RHOBTB3O94955 611 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 PRF1P14222 555 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 OR1E1P30953 314 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 ARF5P84085 180 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 MC2RQ01718 297 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 MAP7Q14244 749 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 TAF5Q15542 800 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 INPP5JQ15735 1006 aaPredicted RBP18.2■□□□□ 0.5
CLK3-227ENST00000570296 LRRC73Q5JTD7 316 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 ZNF683Q8IZ20 524 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 ESX1Q8N693 406 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 TTC13Q8NBP0 860 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 OR56A4Q8NGH8 313 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 MARVELD3Q96A59 401 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 VOPP1Q96AW1 172 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 KLHL32Q96NJ5 620 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 WRAP53Q9BUR4 548 aaKnown RBP18.2■□□□□ 0.5
CLK3-227ENST00000570296 ATP13A1Q9HD20 1204 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 MRPS18BQ9Y676 258 aaKnown RBP18.2■□□□□ 0.5
CLK3-227ENST00000570296 DIDO1Q9BTC0 2240 aaKnown RBP18.2■□□□□ 0.5
CLK3-227ENST00000570296 FBN3Q75N90 2809 aa18.2■□□□□ 0.5
CLK3-227ENST00000570296 DRGXA6NNA5 263 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 KRIT1O00522 736 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 STK17BO94768 372 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 POP4O95707 220 aaKnown RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 GSRP00390 522 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 GLI1P08151 1106 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 SYT1P21579 422 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 VARSP26640 1264 aaKnown RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 NOP2P46087 812 aaKnown RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 KIAA1024LP59773 190 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 LRMPQ12912 555 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 MTM1Q13496 603 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 MEA1Q16626 185 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 FOXR2Q6PJQ5 311 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 TFAP2DQ7Z6R9 452 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 APLFQ8IW19 511 aaPredicted RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 DEFB106AQ8N104 65 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 PDCD6IPQ8WUM4 868 aaKnown RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 C5orf34Q96MH7 638 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 TMEM168Q9H0V1 697 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 FGF22Q9HCT0 170 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 PHTF1Q9UMS5 762 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 SLC5A6Q9Y289 635 aa18.19■□□□□ 0.5
CLK3-227ENST00000570296 OAS3Q9Y6K5 1087 aaKnown RBP18.19■□□□□ 0.5
CLK3-227ENST00000570296 TNFRSF10CO14798 259 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 DLGAP3O95886 979 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 CALCAP01258 141 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 EPB41P11171 864 aaKnown RBP18.18■□□□□ 0.5
CLK3-227ENST00000570296 KELP23276 732 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 CSF2RBP32927 897 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 LEPRP48357 1165 aaKnown RBP18.18■□□□□ 0.5
CLK3-227ENST00000570296 SUOXP51687 545 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 SNRPD1P62314 119 aaKnown RBP18.18■□□□□ 0.5
CLK3-227ENST00000570296 NME3Q13232 169 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 AGERQ15109 404 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 NADK2Q4G0N4 442 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 TMEM52BQ4KMG9 183 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 LRRC31Q6UY01 552 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 OR2AP1Q8NGE2 309 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 PAGE5Q96GU1 130 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 FBXO8Q9NRD0 319 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 ASNSD1Q9NWL6 643 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 PDP2Q9P2J9 529 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 RPS6KL1Q9Y6S9 549 aa18.18■□□□□ 0.5
CLK3-227ENST00000570296 IGHV1OR21-1A0A087WYE8 117 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 TMEM202A6NGA9 273 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 CACNB4O00305 520 aaPredicted RBP18.17■□□□□ 0.5
CLK3-227ENST00000570296 INPP4BO15327 924 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 HSF2BPO75031 334 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 YEATS4O95619 227 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 CD160O95971 181 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 BMP6P22004 513 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 F8A1P23610 371 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 MPSTP25325 297 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 PGDP52209 483 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ELP6Q0PNE2 266 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 DPYDQ12882 1025 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ERV3-1Q14264 604 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 POLD3Q15054 466 aaPredicted RBP18.17■□□□□ 0.5
CLK3-227ENST00000570296 TSR1Q2NL82 804 aaKnown RBP18.17■□□□□ 0.5
CLK3-227ENST00000570296 MYLK3Q32MK0 819 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms