RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 KIAA1143Q96AT1 154 aaPredicted RBP11.87□□□□□ -0.51
CLK3-222ENST00000568232 CTRCQ99895 268 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 DDA1Q9BW61 102 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 C1QTNF7Q9BXJ2 289 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 SPRY4Q9C004 299 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 ATP13A1Q9HD20 1204 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 TMEM9Q9P0T7 183 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 C2CD3Q4AC94 2353 aa11.87□□□□□ -0.51
CLK3-222ENST00000568232 PRRC2CQ9Y520 2896 aaKnown RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 CELSR1Q9NYQ6 3014 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 TMEM202A6NGA9 273 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 CETN3O15182 167 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 TFE3P19532 575 aaPredicted RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 TCN2P20062 427 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 LIMK2P53671 638 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 SLC20A2Q08357 652 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ARTNQ5T4W7 220 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ATXN7L2Q5T6C5 722 aaPredicted RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 DCAF12Q5T6F0 453 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 OTUD1Q5VV17 481 aaPredicted RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 LEKR1Q6ZMV7 388 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 FAM129CQ86XR2 697 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 CCDC13Q8IYE1 715 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 SMYD4Q8IYR2 804 aaPredicted RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 NLGN4XQ8N0W4 816 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 PLA2G15Q8NCC3 412 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 AGBL5Q8NDL9 886 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 NLGN4YQ8NFZ3 816 aaPredicted RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 STK32AQ8WU08 396 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ARHGEF26Q96DR7 871 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 WDR92Q96MX6 357 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 NT5C1BQ96P26 610 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 HAPLN3Q96S86 360 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ASPSCR1Q9BZE9 553 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 TKTL2Q9H0I9 626 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 FGF22Q9HCT0 170 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ACP6Q9NPH0 428 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 RTN4Q9NQC3 1192 aaKnown RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 PIGVQ9NUD9 493 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 SPATS2LQ9NUQ6 558 aaKnown RBP11.86□□□□□ -0.51
CLK3-222ENST00000568232 ADGRG4Q8IZF6 3080 aa11.86□□□□□ -0.51
CLK3-222ENST00000568232 ZFHX3Q15911 3703 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 NF1P21359 2839 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 ILVBLA1L0T0 632 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 WIPF3A6NGB9 483 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 RHPN2P1A8MT19 583 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 MKRN2OSH3BPM6 223 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 SRGAP2O75044 1071 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 DDAH2O95865 285 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 PCCBP05166 539 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 FURINP09958 794 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 TIMP2P16035 220 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 MAP4P27816 1152 aaKnown RBP11.85□□□□□ -0.51
CLK3-222ENST00000568232 CSTF2P33240 577 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLK3-222ENST00000568232 ACVRL1P37023 503 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 PDCLQ13371 301 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 MRPL49Q13405 166 aaKnown RBP11.85□□□□□ -0.51
CLK3-222ENST00000568232 MYLK3Q32MK0 819 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 KDELC2Q7Z4H8 507 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 ARHGEF19Q8IW93 802 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 NETO2Q8NC67 525 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 CCDC112Q8NEF3 446 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 SLC35C1Q96A29 364 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 RTP4Q96DX8 246 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 RNF31Q96EP0 1072 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 ARHGEF38Q9NXL2 777 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 ZNF212Q9UDV6 495 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 DGKBQ9Y6T7 804 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 POLQO75417 2590 aa11.85□□□□□ -0.51
CLK3-222ENST00000568232 LRP4O75096 1905 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 CSMD2Q7Z408 3487 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 A0A1B0GVL5 298 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 LETM1O95202 739 aaPredicted RBP11.84□□□□□ -0.51
CLK3-222ENST00000568232 POP4O95707 220 aaKnown RBP11.84□□□□□ -0.51
CLK3-222ENST00000568232 THRAP10827 490 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 F8A1P23610 371 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 CSF2RBP32927 897 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 GNA12Q03113 381 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 DPYDQ12882 1025 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 GDPD4Q6W3E5 623 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 ZNF438Q7Z4V0 828 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 TMEM135Q86UB9 458 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 DRC7Q8IY82 874 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 WDTC1Q8N5D0 677 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 BMPERQ8N8U9 685 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 OR2AP1Q8NGE2 309 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 OR56A4Q8NGH8 313 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 PRR7Q8TB68 274 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 PATE1Q8WXA2 126 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 ISG20Q96AZ6 181 aaKnown RBP11.84□□□□□ -0.51
CLK3-222ENST00000568232 TCTN2Q96GX1 697 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 CPXM1Q96SM3 734 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 WDCPQ9H6R7 721 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 METTL14Q9HCE5 456 aaKnown RBP11.84□□□□□ -0.51
CLK3-222ENST00000568232 TLK1Q9UKI8 766 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 MAP4K5Q9Y4K4 846 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 KCTD3Q9Y597 815 aa11.84□□□□□ -0.51
CLK3-222ENST00000568232 ITPR3Q14573 2671 aa11.83□□□□□ -0.51
CLK3-222ENST00000568232 IGLV3-10A0A075B6K4 115 aa11.83□□□□□ -0.52
CLK3-222ENST00000568232 TCP11X1B4DZS4 312 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms