RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 EIF4A3P38919 411 aaKnown RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 THOP1P52888 689 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 YPEL5P62699 121 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 UBXN1Q04323 297 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 SERINC3Q13530 473 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 PTK2BQ14289 1009 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 NCAPHQ15003 741 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 NR0B2Q15466 257 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 C4orf48Q5BLP8 95 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 FAXCQ5TGI0 409 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ACAD10Q6JQN1 1059 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 DNAJC24Q6P3W2 148 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 PCSK4Q6UW60 755 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 GPR155Q7Z3F1 870 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 SLC35F3Q8IY50 421 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 MCOLN2Q8IZK6 566 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 LSMEM2Q8N112 164 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 UMODL1-AS1Q8N2C9 162 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ZNF248Q8NDW4 579 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 BTN2A2Q8WVV5 523 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 EXOC2Q96KP1 924 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ZNF578Q96N58 590 aaPredicted RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 ERGIC2Q96RQ1 377 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 LGMNQ99538 433 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 CNPY3Q9BT09 278 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 LRRC61Q9BV99 259 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 BOCQ9BWV1 1114 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 CPEB1Q9BZB8 566 aaKnown RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 HSD3B7Q9H2F3 369 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 CATSPERBQ9H7T0 1116 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 POLR1BQ9H9Y6 1135 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ASCL3Q9NQ33 180 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 GPATCH2LQ9NWQ4 482 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 TAS2R14Q9NYV8 317 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 DKK3Q9UBP4 350 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 APOBEC3BQ9UH17 382 aaKnown RBP8.55□□□□□ -1.04
USP28-215ENST00000545608 PCDHB11Q9Y5F2 797 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 ENTPD2Q9Y5L3 495 aa8.55□□□□□ -1.04
USP28-215ENST00000545608 TSPAN11A1L157 253 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PMS2P1A4D2B8 440 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ESPNB1AK53 854 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 LMO7DNF2Z398 122 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PRKCGP05129 697 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ANXA6P08133 673 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 RGRP47804 291 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PCBP4P57723 403 aaKnown RBP8.54□□□□□ -1.04
USP28-215ENST00000545608 ERVPABLB-1P60509 514 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 CXADRP78310 365 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SH3BP2P78314 561 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 MYL5Q02045 173 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PPARDQ03181 441 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 IRF4Q15306 451 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 CA9Q16790 459 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 UGP2Q16851 508 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ALG11Q2TAA5 492 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 WSCD2Q2TBF2 565 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PARP15Q460N3 678 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 C3orf38Q5JPI3 329 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 DCUN1D2Q6PH85 259 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 MACC1Q6ZN28 852 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 IRF2BP2Q7Z5L9 587 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ZSWIM9Q86XI8 627 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 DNAAF5Q86Y56 855 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ARFGAP1Q8N6T3 406 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 HCAR2Q8TDS4 363 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 TSACCQ96A04 125 aaPredicted RBP8.54□□□□□ -1.04
USP28-215ENST00000545608 ATXN7L3BQ96GX2 97 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PRR11Q96HE9 360 aaPredicted RBP8.54□□□□□ -1.04
USP28-215ENST00000545608 CELF6Q96J87 481 aaKnown RBP8.54□□□□□ -1.04
USP28-215ENST00000545608 VCPIP1Q96JH7 1222 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 TBATAQ96M53 351 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SYT11Q9BT88 431 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 C1QTNF7Q9BXJ2 289 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SLC13A1Q9BZW2 595 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SLC39A8Q9C0K1 460 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SUV39H2Q9H5I1 410 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 LRRC19Q9H756 370 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PDFQ9HBH1 243 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 PCDH12Q9NPG4 1184 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 ANO10Q9NW15 660 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 NCKIPSDQ9NZQ3 722 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 UBA2Q9UBT2 640 aaPredicted RBP8.54□□□□□ -1.04
USP28-215ENST00000545608 PADI4Q9UM07 663 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 SATB2Q9UPW6 733 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 IGSF10Q6WRI0 2623 aa8.54□□□□□ -1.04
USP28-215ENST00000545608 LAMA5O15230 3695 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 CHD5Q8TDI0 1954 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ITPR1Q14643 2758 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ANKRD62A6NC57 917 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TMCO5BA8MYB1 307 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 TOR1BO14657 336 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 FGF10O15520 208 aaPredicted RBP8.53□□□□□ -1.04
USP28-215ENST00000545608 TEX33O43247 280 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 PRAMEF11O60813 436 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 ATP1A3P13637 1013 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 C6P13671 934 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 FERP16591 822 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 CDK11BP21127 795 aaKnown RBP8.53□□□□□ -1.04
USP28-215ENST00000545608 TNFAIP3P21580 790 aa8.53□□□□□ -1.04
USP28-215ENST00000545608 XPAP23025 273 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms