RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TTYH3Q9C0H2 523 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 MAGEH1Q9H213 219 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 NDFIP2Q9NV92 336 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 HOOK1Q9UJC3 728 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 COQ6Q9Y2Z9 468 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 MFHAS1Q9Y4C4 1052 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 OR1A2Q9Y585 309 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 PCDHGA3Q9Y5H0 932 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 ATP6V1DQ9Y5K8 247 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 SPTAN1Q13813 2472 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 ZFC3H1O60293 1989 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 PPP1R3GB7ZBB8 358 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 HGSO14964 777 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 B4GAT1O43505 415 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 KDELR3O43731 214 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 FGF3P11487 239 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 LIFP15018 202 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 RHOQP17081 205 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 XPAP23025 273 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 GABRB2P47870 512 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 MAPKAPK2P49137 400 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 ARSDP51689 593 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 AGERQ15109 404 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 CLPPQ16740 277 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 MAP9Q49MG5 647 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 EFHC2Q5JST6 749 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 KCTD16Q68DU8 428 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 NLRP14Q86W24 1093 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 FAM131BQ86XD5 332 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 SFTPA2Q8IWL1 248 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 IL22RA1Q8N6P7 574 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 HCAR2Q8TDS4 363 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 HMCESQ96FZ2 354 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 PDXPQ96GD0 296 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 DPEP2Q9H4A9 486 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 RDH14Q9HBH5 336 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 GDPD2Q9HCC8 539 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 PLCB1Q9NQ66 1216 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 APEX2Q9UBZ4 518 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 OR12D3Q9UGF7 316 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 DNAI1Q9UI46 699 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 MYO9AB2RTY4 2548 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 NOTCH2Q04721 2471 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 CHD5Q8TDI0 1954 aa11.72□□□□□ -0.53
CLSTN3-209ENST00000539982 SDK2Q58EX2 2172 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 LRP4O75096 1905 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 BLACEA4D250 179 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 ZSCAN5CA6NGD5 496 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 CAPN5O15484 640 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 BUB1O43683 1085 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 IGSF6O95976 241 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 UGT1A3P35503 534 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 CLCN1P35523 988 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 FLT3P36888 993 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 NRG1Q02297 640 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 APBA1Q02410 837 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 MTM1Q13496 603 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 UGP2Q16851 508 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 AMZ1Q400G9 498 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 FAM102AQ5T9C2 384 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 SPECC1LQ69YQ0 1117 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 RWDD4Q6NW29 188 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 SLC47A2Q86VL8 602 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 XYLT1Q86Y38 959 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 TMEM35BQ8NCS4 154 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 OR56A4Q8NGH8 313 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 CASKIN2Q8WXE0 1202 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 OR1E3Q8WZA6 343 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 CFAP57Q96MR6 1250 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 TIGD1Q96MW7 591 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 LRRC4CQ9HCJ2 640 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 ZNF71Q9NQZ8 489 aaPredicted RBP11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 TMEM248Q9NWD8 314 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 MAN1B1Q9UKM7 699 aa11.71□□□□□ -0.53
CLSTN3-209ENST00000539982 LRRK1Q38SD2 2015 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 IGHV5-10-1A0A0J9YXX1 117 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TMEM202A6NGA9 273 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ZNF891A8MT65 544 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 B4DGG1 531 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 CACNB4O00305 520 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 FOXN3O00409 490 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TNFRSF10CO14798 259 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ZW10O43264 779 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 RAMP2O60895 175 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TMCC1O94876 653 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 PCCBP05166 539 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 BMP6P22004 513 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 KELP23276 732 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ALDH4A1P30038 563 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 CDH5P33151 784 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ADRA1BP35368 520 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 LIG3P49916 1009 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 STX17P56962 302 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 OR1D5P58170 312 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 KIAA1024LP59773 190 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 RHOAP61586 193 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 INO80DQ53TQ3 878 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 MANEALQ5VSG8 457 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 TRNP1Q6NT89 227 aa11.7□□□□□ -0.54
CLSTN3-209ENST00000539982 ERAP2Q6P179 960 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms