RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ING2Q9H160 280 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 COPS7BQ9H9Q2 264 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SSU72Q9NP77 194 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 DYRK4Q9NR20 520 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RIC8BQ9NVN3 520 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RAD54BQ9Y620 910 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 EME2A4GXA9 379 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RFPL1O75677 317 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 CCR10P46092 362 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 CLCN5P51795 746 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 PLOD1Q02809 727 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 TMED1Q13445 227 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 ZNF697Q5TEC3 545 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 DET1Q7L5Y6 550 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 TTC9BQ8N6N2 239 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 FNDC5Q8NAU1 212 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MTFMTQ96DP5 389 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 FAR2Q96K12 515 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 FCRL3Q96P31 734 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 HGH1Q9BTY7 390 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SLC25A51Q9H1U9 297 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 WDR41Q9HAD4 459 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 ZMYND8Q9ULU4 1186 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 PSMD12O00232 456 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 AMHP03971 560 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 TYMPP19971 482 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 MLLT6P55198 1093 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PAFAH1B3Q15102 231 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ALFQ53S48 1182 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 FAM151BQ6UXP7 276 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 OR13C4Q8NGS5 318 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 HEXDCQ8WVB3 486 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 CYGBQ8WWM9 190 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 LENG8Q96PV6 779 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 CDK5RAP1Q96SZ6 601 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ARL5AQ9Y689 179 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 BRWD3Q6RI45 1802 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 DLEC1Q9Y238 1755 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ATXN2Q99700 1313 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 A0A087X1B8 175 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 C1orf232A0A0U1RR37 186 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 E7ESA3 106 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 MGEA5O60502 916 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 CLASP2O75122 1294 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 EOMESO95936 686 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 AHSGP02765 367 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 FGFR3P22607 806 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 SKIV2L2P42285 1042 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ESRRGP62508 458 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 HSPA14Q0VDF9 509 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 HNRNPDQ14103 355 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 VTI1BQ9UEU0 232 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 COL11A2P13942 1736 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 SYCE1LA8MT33 242 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 FFAR3O14843 346 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GPR42O15529 346 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PRKCHP24723 683 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GNA12Q03113 381 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PREPLQ4J6C6 727 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 UGT3A1Q6NUS8 523 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PIWIL4Q7Z3Z4 852 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GPSM1Q86YR5 675 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ARL14EPQ8N8R7 260 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 CDYL2Q8N8U2 506 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GDPD5Q8WTR4 605 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 RPL10LQ96L21 214 aaKnown RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 C17orf80Q9BSJ5 609 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GPR62Q9BZJ7 368 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ACTR8Q9H981 624 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 GID8Q9NWU2 228 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 FETUBQ9UGM5 382 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 SERPIND1P05546 499 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 LINC00032P0C843 101 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PIK3R1P27986 724 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 IL2P60568 153 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 KLF10Q13118 480 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 INPP5AQ14642 412 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 TEDDM1Q5T9Z0 273 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 EMC10Q5UCC4 262 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 LRRC49Q8IUZ0 686 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 NAT16Q8N8M0 369 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 NAT14Q8WUY8 206 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 PRR11Q96HE9 360 aaPredicted RBP13.3□□□□□ -0.28
HMGN1-216ENST00000486741 SEPHS2Q99611 448 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ECSITQ9BQ95 431 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 ZDHHC6Q9H6R6 413 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 WNK3Q9BYP7 1800 aa13.3□□□□□ -0.28
HMGN1-216ENST00000486741 UNCXA6NJT0 531 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 SYNCRIPO60506 623 aaKnown RBP13.29□□□□□ -0.28
HMGN1-216ENST00000486741 SLC2A4P14672 509 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 GJA1P17302 382 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 MC4RP32245 332 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 ZBTB6Q15916 424 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 STXBP5Q5T5C0 1151 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 SGIP1Q9BQI5 828 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 C1orf50Q9BV19 199 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 CCDC90BQ9GZT6 254 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 TMEM161AQ9NX61 479 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 TIMM22Q9Y584 194 aa13.29□□□□□ -0.28
HMGN1-216ENST00000486741 TCRBV5S1A1TA0A578 114 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms