RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GM2AP17900 193 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CDK11BP21127 795 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 HCAR3P49019 387 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PAPOLAP51003 745 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PCBP4P57723 403 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PPARDQ03181 441 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NSUN2Q08J23 767 aaKnown RBP eCLIP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LRRC14Q15048 493 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ALG11Q2TAA5 492 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ERMARDQ5T6L9 678 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 KCTD16Q68DU8 428 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PPP1R2P3Q6NXS1 205 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DCUN1D2Q6PH85 259 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NYAP1Q6ZVC0 841 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GPR155Q7Z3F1 870 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CAMK1DQ8IU85 385 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PSTKQ8IV42 348 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CBARPQ8N350 705 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TSEN2Q8NCE0 465 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SLC39A7Q92504 469 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NAT6Q93015 286 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ATXN7L3BQ96GX2 97 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EXOC2Q96KP1 924 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PCMTD1Q96MG8 357 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FCRL3Q96P31 734 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 KCTD15Q96SI1 283 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 WRAP53Q9BUR4 548 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 APOOQ9BUR5 198 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SLC13A1Q9BZW2 595 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TRIM7Q9C029 511 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SEPT11Q9NVA2 429 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PARVAQ9NVD7 372 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GPATCH2LQ9NWQ4 482 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 AP4E1Q9UPM8 1137 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MUSKO15146 869 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ANXA6P08133 673 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 HOXC4P09017 264 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ERCC2P18074 760 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TNFAIP3P21580 790 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TRIM23P36406 574 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PRKCIP41743 596 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RPIAP49247 311 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LIG3P49916 1009 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 BLKP51451 505 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TPI1P60174 286 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RALGDSQ12967 914 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 INPP5AQ14642 412 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NFATC4Q14934 902 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FAXCQ5TGI0 409 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 E4F1Q66K89 784 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 OGFOD3Q6PK18 319 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RBM44Q6ZP01 1051 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RFX8Q6ZV50 586 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF571Q7Z3V5 609 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SRLQ86TD4 932 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF354CQ86Y25 554 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FSTL5Q8N475 847 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NPWQ8N729 165 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 WDR48Q8TAF3 677 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TSACCQ96A04 125 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FUBP1Q96AE4 644 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CELF6Q96J87 481 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 BPIFA3Q9BQP9 254 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SNRNP25Q9BV90 132 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DPH1Q9BZG8 443 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EDEM3Q9BZQ6 932 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RABGEF1Q9UJ41 708 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PADI4Q9UM07 663 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SATB2Q9UPW6 733 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DGKBQ9Y6T7 804 aa12.34□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PIEZO2Q9H5I5 2752 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PMS2P1A4D2B8 440 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ARHGAP42A6NI28 874 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 EEF2KO00418 725 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PEX11BO96011 259 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PRB1P04280 392 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PSMA2P25787 234 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MIPP30301 263 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MLLT3P42568 568 aaPredicted RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ZNF135P52742 658 aaPredicted RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 SRP54P61011 504 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 MTM1Q13496 603 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DPYSQ14117 519 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RFTN1Q14699 578 aaPredicted RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ELOCQ15369 112 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 LIPIQ6XZB0 460 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 ARHGAP36Q6ZRI8 547 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CLEC14AQ86T13 490 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 TP53INP2Q8IXH6 220 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 PLA2G15Q8NCC3 412 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GPR156Q8NFN8 814 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 GLMNQ92990 594 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 WBP1Q96G27 269 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 RBM15Q96T37 977 aaKnown RBP eCLIP12.33□□□□□ -0.449e-7■■□□□ 13.6
MSH5-SAPCD1-205ENST00000476085 LGMNQ99538 433 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CCDC3Q9BQI4 270 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 DHX35Q9H5Z1 703 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 HAUS4Q9H6D7 363 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 THSD1Q9NS62 852 aa12.33□□□□□ -0.44
MSH5-SAPCD1-205ENST00000476085 CWC15Q9P013 229 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms