RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SSNA1O43805 119 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PPP2R1BP30154 601 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 MSX2P35548 267 aaPredicted RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 ACSBG2Q5FVE4 666 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 KHDRBS2Q5VWX1 349 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 LRRC49Q8IUZ0 686 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 CAMKK1Q8N5S9 505 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PGLYRP2Q96PD5 576 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 DNAJB4Q9UDY4 337 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 RPS6KA6Q9UK32 745 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PADI4Q9UM07 663 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 CLCA2Q9UQC9 943 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ERGIC3Q9Y282 383 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 RPL7AP62424 266 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 PUDPQ08623 228 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 TREML2Q5T2D2 321 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 METTL21CQ5VZV1 264 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 HGSNATQ68CP4 663 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ANO7Q6IWH7 933 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PLET1Q6UQ28 207 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 MOB2Q70IA6 237 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 AP3S1Q92572 193 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 TAMM41Q96BW9 452 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 TBL1YQ9BQ87 522 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 CLN6Q9NWW5 311 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SH3BP4Q9P0V3 963 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ARHGAP28Q9P2N2 729 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 AFDNP55196 1824 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 USP12O75317 370 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 OR1E1P30953 314 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SEPHS1P49903 392 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SCNN1GP51170 649 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 NEPROQ6NW34 567 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 IL27RAQ6UWB1 636 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 EIF3MQ7L2H7 374 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 PROSER1Q86XN7 944 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PSTKQ8IV42 348 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 OFCC1Q8IZS5 231 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ZBTB8BQ8NAP8 495 aaPredicted RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 SLC44A1Q8WWI5 657 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 DNAJC1Q96KC8 554 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 KREMEN1Q96MU8 473 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 YME1L1Q96TA2 773 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 NPAS2Q99743 824 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 HOPXQ9BPY8 73 aaPredicted RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 TDRKHQ9Y2W6 561 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 STON1Q9Y6Q2 735 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 IGLV3-22A0A075B6J6 115 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 C2orf71A6NGG8 1288 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CABYRO75952 493 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 EPN2O95208 641 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CLTBP09497 229 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CAPZA2P47755 286 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ACLYP53396 1101 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 LDLRAP1Q5SW96 308 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 RFWD3Q6PCD5 774 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CXCL17Q6UXB2 119 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 GPR142Q7Z601 462 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 C11orf96Q7Z7L8 435 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 DSELQ8IZU8 1212 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 KLHL28Q9NXS3 571 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 EGFL7Q9UHF1 273 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 DGKBQ9Y6T7 804 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PARP4Q9UKK3 1724 aaKnown RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 PEX11AO75192 247 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 TRUB2O95900 331 aaKnown RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 GJB1P08034 283 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CENPAP49450 140 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 TPTEP56180 551 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PRAMEF19Q5SWL8 479 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 FNBP1LQ5T0N5 605 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 BICRALQ6AI39 1079 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ZNF621Q6ZSS3 439 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 THAP5Q7Z6K1 395 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PGAM4Q8N0Y7 254 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ANKRD52Q8NB46 1076 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 Q96MT0 163 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 SNRNP25Q9BV90 132 aaKnown RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 DNAJC28Q9NX36 388 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 BBIP1A8MTZ0 92 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 GUCY1B2O75343 617 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 NOL4O94818 638 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 MAGP20916 626 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CRHR1P34998 444 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 GSTM5P46439 218 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 INHBEP58166 350 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 OLR1P78380 273 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PLCL1Q15111 1095 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 SLC39A12Q504Y0 691 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 NPNTQ6UXI9 565 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 DEFB128Q7Z7B8 93 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PIGZQ86VD9 579 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 REXO5Q96IC2 774 aaKnown RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 B3GALT6Q96L58 329 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 RNF157Q96PX1 679 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 MRPL57Q9BQC6 102 aaKnown RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 PREBQ9HCU5 417 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 TAS2R1Q9NYW7 299 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 TBC1D30Q9Y2I9 924 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 KLHL33A6NCF5 533 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms