RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 PMFBP1Q8TBY8 1022 aa17.14■□□□□ 0.33
VPS33B-202ENST00000535906 TRIM27P14373 513 aa17.13■□□□□ 0.33
VPS33B-202ENST00000535906 LAS1LQ9Y4W2 734 aaKnown RBP17.13■□□□□ 0.33
VPS33B-202ENST00000535906 DIP2AQ14689 1571 aa17.13■□□□□ 0.33
VPS33B-202ENST00000535906 FTSJ3Q8IY81 847 aaKnown RBP17.13■□□□□ 0.33
VPS33B-202ENST00000535906 SSH2Q76I76 1423 aa17.13■□□□□ 0.33
VPS33B-202ENST00000535906 C8orf34Q49A92 452 aa17.12■□□□□ 0.33
VPS33B-202ENST00000535906 RGPD8O14715 1765 aaPredicted RBP17.12■□□□□ 0.33
VPS33B-202ENST00000535906 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
VPS33B-202ENST00000535906 EIF4A2Q14240 407 aaKnown RBP17.11■□□□□ 0.33
VPS33B-202ENST00000535906 FAM161AQ3B820 660 aa17.11■□□□□ 0.33
VPS33B-202ENST00000535906 DLG5Q8TDM6 1919 aa17.11■□□□□ 0.33
VPS33B-202ENST00000535906 ATF7IPQ6VMQ6 1270 aa17.11■□□□□ 0.33
VPS33B-202ENST00000535906 XRN1Q8IZH2 1706 aaKnown RBP17.11■□□□□ 0.33
VPS33B-202ENST00000535906 KCNA6P17658 529 aa17.1■□□□□ 0.33
VPS33B-202ENST00000535906 NALCNQ8IZF0 1738 aa17.1■□□□□ 0.33
VPS33B-202ENST00000535906 DDRGK1Q96HY6 314 aa17.1■□□□□ 0.33
VPS33B-202ENST00000535906 CEP170BQ9Y4F5 1589 aaPredicted RBP17.1■□□□□ 0.33
VPS33B-202ENST00000535906 USP31Q70CQ4 1352 aa17.09■□□□□ 0.33
VPS33B-202ENST00000535906 AEBP1Q8IUX7 1158 aa17.09■□□□□ 0.33
VPS33B-202ENST00000535906 SOX12O15370 315 aa17.09■□□□□ 0.33
VPS33B-202ENST00000535906 HSP90AB2PQ58FF8 381 aa17.09■□□□□ 0.33
VPS33B-202ENST00000535906 PEAK1Q9H792 1746 aa17.09■□□□□ 0.33
VPS33B-202ENST00000535906 FAM83GA6ND36 823 aa17.08■□□□□ 0.33
VPS33B-202ENST00000535906 ZNF853P0CG23 659 aa17.08■□□□□ 0.33
VPS33B-202ENST00000535906 CALD1Q05682 793 aaKnown RBP17.08■□□□□ 0.33
VPS33B-202ENST00000535906 ALDH1L2Q3SY69 923 aa17.08■□□□□ 0.33
VPS33B-202ENST00000535906 SULT6B1Q6IMI4 303 aa17.08■□□□□ 0.32
VPS33B-202ENST00000535906 NGDNQ8NEJ9 315 aaKnown RBP17.08■□□□□ 0.32
VPS33B-202ENST00000535906 IFT57Q9NWB7 429 aa17.08■□□□□ 0.32
VPS33B-202ENST00000535906 TTC21AQ8NDW8 1320 aa17.08■□□□□ 0.32
VPS33B-202ENST00000535906 GNAI1P63096 354 aa17.07■□□□□ 0.32
VPS33B-202ENST00000535906 MBIPQ9NS73 344 aa17.07■□□□□ 0.32
VPS33B-202ENST00000535906 KIF16BQ96L93 1317 aa17.07■□□□□ 0.32
VPS33B-202ENST00000535906 RIMS1Q86UR5 1692 aaKnown RBP17.07■□□□□ 0.32
VPS33B-202ENST00000535906 DEKP35659 375 aaKnown RBP17.07■□□□□ 0.32
VPS33B-202ENST00000535906 ITPRIPQ8IWB1 547 aa17.07■□□□□ 0.32
VPS33B-202ENST00000535906 TSPYL6Q8N831 410 aa17.07■□□□□ 0.32
VPS33B-202ENST00000535906 VAMP4O75379 141 aa17.06■□□□□ 0.32
VPS33B-202ENST00000535906 DCTN1Q14203 1278 aa17.06■□□□□ 0.32
VPS33B-202ENST00000535906 LMOD3Q0VAK6 560 aa17.06■□□□□ 0.32
VPS33B-202ENST00000535906 TMEM57Q8N5G2 664 aa17.06■□□□□ 0.32
VPS33B-202ENST00000535906 RWDD1Q9H446 243 aaPredicted RBP17.06■□□□□ 0.32
VPS33B-202ENST00000535906 RTL5Q5HYW3 569 aaPredicted RBP17.05■□□□□ 0.32
VPS33B-202ENST00000535906 ZNF428Q96B54 188 aa17.05■□□□□ 0.32
VPS33B-202ENST00000535906 CFAP44Q96MT7 982 aa17.05■□□□□ 0.32
VPS33B-202ENST00000535906 DDX19BQ9UMR2 479 aa17.05■□□□□ 0.32
VPS33B-202ENST00000535906 IPO8O15397 1037 aaKnown RBP17.05■□□□□ 0.32
VPS33B-202ENST00000535906 MAP3K19Q56UN5 1328 aa17.04■□□□□ 0.32
VPS33B-202ENST00000535906 PIK3R4Q99570 1358 aa17.04■□□□□ 0.32
VPS33B-202ENST00000535906 ELL2O00472 640 aaPredicted RBP17.04■□□□□ 0.32
VPS33B-202ENST00000535906 BRPF1P55201 1214 aaPredicted RBP17.04■□□□□ 0.32
VPS33B-202ENST00000535906 PDZRN3Q9UPQ7 1066 aa17.03■□□□□ 0.32
VPS33B-202ENST00000535906 RGPD1P0DJD0 1748 aa17.03■□□□□ 0.32
VPS33B-202ENST00000535906 PIK3C2AO00443 1686 aa17.02■□□□□ 0.31
VPS33B-202ENST00000535906 ANKARQ7Z5J8 1434 aa17.02■□□□□ 0.31
VPS33B-202ENST00000535906 ANKLE2Q86XL3 938 aa17.01■□□□□ 0.31
VPS33B-202ENST00000535906 MRPL50Q8N5N7 158 aaKnown RBP17.01■□□□□ 0.31
VPS33B-202ENST00000535906 C8orf58Q8NAV2 365 aa17.01■□□□□ 0.31
VPS33B-202ENST00000535906 ZBTB40Q9NUA8 1239 aa17.01■□□□□ 0.31
VPS33B-202ENST00000535906 TWISTNBQ3B726 338 aaPredicted RBP17■□□□□ 0.31
VPS33B-202ENST00000535906 BCL11AQ9H165 835 aa17■□□□□ 0.31
VPS33B-202ENST00000535906 FMN2Q9NZ56 1722 aa17■□□□□ 0.31
VPS33B-202ENST00000535906 SBNO1A3KN83 1393 aa17■□□□□ 0.31
VPS33B-202ENST00000535906 NLRP6P59044 892 aa16.99■□□□□ 0.31
VPS33B-202ENST00000535906 FLT4P35916 1363 aa16.99■□□□□ 0.31
VPS33B-202ENST00000535906 HDAC1Q13547 482 aaPredicted RBP16.99■□□□□ 0.31
VPS33B-202ENST00000535906 RBM33Q96EV2 1170 aaKnown RBP16.99■□□□□ 0.31
VPS33B-202ENST00000535906 USP35Q9P2H5 1018 aa16.99■□□□□ 0.31
VPS33B-202ENST00000535906 CHD2O14647 1828 aaKnown RBP16.98■□□□□ 0.31
VPS33B-202ENST00000535906 VIRMAQ69YN4 1812 aaKnown RBP16.98■□□□□ 0.31
VPS33B-202ENST00000535906 MCM10Q7L590 875 aa16.98■□□□□ 0.31
VPS33B-202ENST00000535906 NUTM2GQ5VZR2 741 aa16.98■□□□□ 0.31
VPS33B-202ENST00000535906 AMPHP49418 695 aa16.97■□□□□ 0.31
VPS33B-202ENST00000535906 ARHGAP45Q92619 1136 aa16.97■□□□□ 0.31
VPS33B-202ENST00000535906 ZNF142P52746 1687 aaPredicted RBP16.97■□□□□ 0.31
VPS33B-202ENST00000535906 ARHGEF10O15013 1369 aa16.97■□□□□ 0.31
VPS33B-202ENST00000535906 ADAMTSL3P82987 1691 aa16.96■□□□□ 0.31
VPS33B-202ENST00000535906 MARF1Q9Y4F3 1742 aaKnown RBP16.95■□□□□ 0.3
VPS33B-202ENST00000535906 SEC24BO95487 1268 aa16.95■□□□□ 0.3
VPS33B-202ENST00000535906 EYA1Q99502 592 aa16.95■□□□□ 0.3
VPS33B-202ENST00000535906 CHL1O00533 1208 aa16.95■□□□□ 0.3
VPS33B-202ENST00000535906 ABTB2Q8N961 1025 aa16.95■□□□□ 0.3
VPS33B-202ENST00000535906 ZBTB7BO15156 539 aaPredicted RBP16.94■□□□□ 0.3
VPS33B-202ENST00000535906 FOXO3O43524 673 aa16.94■□□□□ 0.3
VPS33B-202ENST00000535906 KRT24Q2M2I5 525 aa16.94■□□□□ 0.3
VPS33B-202ENST00000535906 SETD1BQ9UPS6 1966 aaKnown RBP16.94■□□□□ 0.3
VPS33B-202ENST00000535906 KDRP35968 1356 aa16.94■□□□□ 0.3
VPS33B-202ENST00000535906 MTHFSDQ2M296 383 aaKnown RBP16.94■□□□□ 0.3
VPS33B-202ENST00000535906 IGSF1Q8N6C5 1336 aa16.93■□□□□ 0.3
VPS33B-202ENST00000535906 SMC5Q8IY18 1101 aa16.93■□□□□ 0.3
VPS33B-202ENST00000535906 DAXXQ9UER7 740 aaPredicted RBP16.93■□□□□ 0.3
VPS33B-202ENST00000535906 USP19O94966 1318 aa16.93■□□□□ 0.3
VPS33B-202ENST00000535906 PHF8Q9UPP1 1060 aa16.92■□□□□ 0.3
VPS33B-202ENST00000535906 ABCC4O15439 1325 aa16.92■□□□□ 0.3
VPS33B-202ENST00000535906 HOXC9P31274 260 aa16.92■□□□□ 0.3
VPS33B-202ENST00000535906 CRB1P82279 1406 aa16.92■□□□□ 0.3
VPS33B-202ENST00000535906 SLC4A3P48751 1232 aa16.9■□□□□ 0.3
VPS33B-202ENST00000535906 USP54Q70EL1 1684 aa16.9■□□□□ 0.3
VPS33B-202ENST00000535906 C14orf37Q86TY3 774 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms