RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 OVOS2Q6IE36 1432 aa13.94□□□□□ -0.18
USP4-214ENST00000491791 NUTM2AQ8IVF1 878 aaPredicted RBP13.94□□□□□ -0.18
USP4-214ENST00000491791 TRIM35Q9UPQ4 493 aa13.94□□□□□ -0.18
USP4-214ENST00000491791 USP31Q70CQ4 1352 aa13.94□□□□□ -0.18
USP4-214ENST00000491791 RARSP54136 660 aaKnown RBP13.93□□□□□ -0.18
USP4-214ENST00000491791 LRRC59Q96AG4 307 aaKnown RBP13.93□□□□□ -0.18
USP4-214ENST00000491791 RSPH6AQ9H0K4 717 aa13.93□□□□□ -0.18
USP4-214ENST00000491791 TTC21BQ7Z4L5 1316 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 TTC21AQ8NDW8 1320 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 USP54Q70EL1 1684 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 USP6P35125 1406 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 IL13P35225 146 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 CENPQQ7L2Z9 268 aaPredicted RBP13.92□□□□□ -0.18
USP4-214ENST00000491791 COG3Q96JB2 828 aa13.92□□□□□ -0.18
USP4-214ENST00000491791 MAPK8IP3Q9UPT6 1336 aa13.91□□□□□ -0.18
USP4-214ENST00000491791 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP4-214ENST00000491791 MST1RQ04912 1400 aa13.9□□□□□ -0.18
USP4-214ENST00000491791 BCAR3O75815 825 aa13.9□□□□□ -0.18
USP4-214ENST00000491791 NME9Q86XW9 330 aa13.9□□□□□ -0.18
USP4-214ENST00000491791 ZNF428Q96B54 188 aa13.9□□□□□ -0.18
USP4-214ENST00000491791 RRP7AQ9Y3A4 280 aaKnown RBP13.9□□□□□ -0.18
USP4-214ENST00000491791 ADGRL3Q9HAR2 1447 aa13.9□□□□□ -0.19
USP4-214ENST00000491791 ACEP12821 1306 aa13.9□□□□□ -0.19
USP4-214ENST00000491791 U2SURPO15042 1029 aaKnown RBP13.89□□□□□ -0.19
USP4-214ENST00000491791 BRPF1P55201 1214 aaPredicted RBP13.89□□□□□ -0.19
USP4-214ENST00000491791 UPF1Q92900 1129 aaKnown RBP eCLIP13.89□□□□□ -0.19
USP4-214ENST00000491791 AFF2P51816 1311 aa13.89□□□□□ -0.19
USP4-214ENST00000491791 FMN2Q9NZ56 1722 aa13.87□□□□□ -0.19
USP4-214ENST00000491791 KIF24Q5T7B8 1368 aa13.87□□□□□ -0.19
USP4-214ENST00000491791 CALD1Q05682 793 aaKnown RBP13.87□□□□□ -0.19
USP4-214ENST00000491791 NEUROD2Q15784 382 aa13.87□□□□□ -0.19
USP4-214ENST00000491791 NFE2L2Q16236 605 aa13.87□□□□□ -0.19
USP4-214ENST00000491791 RGPD1P0DJD0 1748 aa13.87□□□□□ -0.19
USP4-214ENST00000491791 NHSL1Q5SYE7 1610 aa13.86□□□□□ -0.19
USP4-214ENST00000491791 RIPK4P57078 832 aa13.86□□□□□ -0.19
USP4-214ENST00000491791 C8orf37Q96NL8 207 aa13.86□□□□□ -0.19
USP4-214ENST00000491791 EMILIN1Q9Y6C2 1016 aa13.86□□□□□ -0.19
USP4-214ENST00000491791 RBM6P78332 1123 aaKnown RBP13.85□□□□□ -0.19
USP4-214ENST00000491791 NEFMP07197 916 aa13.84□□□□□ -0.19
USP4-214ENST00000491791 ZNF853P0CG23 659 aa13.84□□□□□ -0.19
USP4-214ENST00000491791 PRKAR2BP31323 418 aa13.84□□□□□ -0.19
USP4-214ENST00000491791 ALDH1L2Q3SY69 923 aa13.84□□□□□ -0.19
USP4-214ENST00000491791 QTRT2Q9H974 415 aaKnown RBP13.84□□□□□ -0.19
USP4-214ENST00000491791 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.2
USP4-214ENST00000491791 LMOD3Q0VAK6 560 aa13.83□□□□□ -0.2
USP4-214ENST00000491791 DDX17Q92841 729 aaKnown RBP13.83□□□□□ -0.2
USP4-214ENST00000491791 CLUAP1Q96AJ1 413 aa13.83□□□□□ -0.2
USP4-214ENST00000491791 NGLY1Q96IV0 654 aa13.83□□□□□ -0.2
USP4-214ENST00000491791 ZRANB1Q9UGI0 708 aa13.83□□□□□ -0.2
USP4-214ENST00000491791 BACH2Q9BYV9 841 aa13.82□□□□□ -0.2
USP4-214ENST00000491791 IFT57Q9NWB7 429 aa13.82□□□□□ -0.2
USP4-214ENST00000491791 PEAK1Q9H792 1746 aa13.81□□□□□ -0.2
USP4-214ENST00000491791 ADAMTS2O95450 1211 aa13.81□□□□□ -0.2
USP4-214ENST00000491791 EXOSC9Q06265 439 aaKnown RBP13.81□□□□□ -0.2
USP4-214ENST00000491791 PIK3C2AO00443 1686 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 FBLN1P23142 703 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 PDE4AP27815 886 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 GNAI1P63096 354 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 ZKSCAN2Q63HK3 967 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 PHACTR3Q96KR7 559 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 SBNO1A3KN83 1393 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 ARHGEF10O15013 1369 aa13.8□□□□□ -0.2
USP4-214ENST00000491791 MARF1Q9Y4F3 1742 aaKnown RBP13.79□□□□□ -0.2
USP4-214ENST00000491791 RGPD8O14715 1765 aaPredicted RBP13.79□□□□□ -0.2
USP4-214ENST00000491791 EIF4A2Q14240 407 aaKnown RBP13.79□□□□□ -0.2
USP4-214ENST00000491791 PMFBP1Q8TBY8 1022 aa13.79□□□□□ -0.2
USP4-214ENST00000491791 ARHGAP45Q92619 1136 aa13.79□□□□□ -0.2
USP4-214ENST00000491791 ORAI2Q96SN7 254 aa13.79□□□□□ -0.2
USP4-214ENST00000491791 SOS2Q07890 1332 aaPredicted RBP13.79□□□□□ -0.2
USP4-214ENST00000491791 KDRP35968 1356 aa13.79□□□□□ -0.2
USP4-214ENST00000491791 RRS1Q15050 365 aaKnown RBP13.78□□□□□ -0.2
USP4-214ENST00000491791 PANK1Q8TE04 598 aa13.78□□□□□ -0.2
USP4-214ENST00000491791 FLT4P35916 1363 aa13.78□□□□□ -0.2
USP4-214ENST00000491791 DLG5Q8TDM6 1919 aa13.78□□□□□ -0.2
USP4-214ENST00000491791 RGS12O14924 1447 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 PPM1GO15355 546 aaPredicted RBP13.77□□□□□ -0.21
USP4-214ENST00000491791 MSH5O43196 834 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 CANXP27824 592 aaKnown RBP13.77□□□□□ -0.21
USP4-214ENST00000491791 MVPQ14764 893 aaKnown RBP13.77□□□□□ -0.21
USP4-214ENST00000491791 NPHP3Q7Z494 1330 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 SSH1Q8WYL5 1049 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 TSR2Q969E8 191 aaKnown RBP13.77□□□□□ -0.21
USP4-214ENST00000491791 KIF16BQ96L93 1317 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 CFAP44Q96MT7 982 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 USP21Q9UK80 565 aa13.77□□□□□ -0.21
USP4-214ENST00000491791 TRPC5Q9UL62 973 aaPredicted RBP13.77□□□□□ -0.21
USP4-214ENST00000491791 IPO8O15397 1037 aaKnown RBP13.76□□□□□ -0.21
USP4-214ENST00000491791 RLBP1P12271 317 aa13.76□□□□□ -0.21
USP4-214ENST00000491791 MYT1Q01538 1121 aa13.76□□□□□ -0.21
USP4-214ENST00000491791 ESCO1Q5FWF5 840 aa13.76□□□□□ -0.21
USP4-214ENST00000491791 ATF7IPQ6VMQ6 1270 aa13.76□□□□□ -0.21
USP4-214ENST00000491791 DZIP1LQ8IYY4 767 aaKnown RBP13.76□□□□□ -0.21
USP4-214ENST00000491791 NGDNQ8NEJ9 315 aaKnown RBP13.76□□□□□ -0.21
USP4-214ENST00000491791 COG6Q9Y2V7 657 aa13.76□□□□□ -0.21
USP4-214ENST00000491791 HMOX1P09601 288 aa13.75□□□□□ -0.21
USP4-214ENST00000491791 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
USP4-214ENST00000491791 RTL1A6NKG5 1358 aa13.74□□□□□ -0.21
USP4-214ENST00000491791 VAMP4O75379 141 aa13.74□□□□□ -0.21
USP4-214ENST00000491791 IGHDP01880 384 aa13.74□□□□□ -0.21
USP4-214ENST00000491791 FRAT1Q92837 279 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms