RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 FANCIQ9NVI1 1328 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 ADGRL3Q9HAR2 1447 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 BCAR3O75815 825 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 PRKAR2BP31323 418 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 NEUROD2Q15784 382 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 C20orf194Q5TEA3 1177 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 SBNO1A3KN83 1393 aa9.84□□□□□ -0.83
COL6A3-208ENST00000468792 RGPD1P0DJD0 1748 aa9.83□□□□□ -0.84
COL6A3-208ENST00000468792 ALDH1L2Q3SY69 923 aa9.83□□□□□ -0.84
COL6A3-208ENST00000468792 NGDNQ8NEJ9 315 aaKnown RBP9.83□□□□□ -0.84
COL6A3-208ENST00000468792 IFT57Q9NWB7 429 aa9.83□□□□□ -0.84
COL6A3-208ENST00000468792 ZRANB1Q9UGI0 708 aa9.83□□□□□ -0.84
COL6A3-208ENST00000468792 NCOA3Q9Y6Q9 1424 aa9.82□□□□□ -0.84
COL6A3-208ENST00000468792 ZNF853P0CG23 659 aa9.82□□□□□ -0.84
COL6A3-208ENST00000468792 ARHGEF10O15013 1369 aa9.82□□□□□ -0.84
COL6A3-208ENST00000468792 FLT4P35916 1363 aa9.82□□□□□ -0.84
COL6A3-208ENST00000468792 KDRP35968 1356 aa9.82□□□□□ -0.84
COL6A3-208ENST00000468792 PIK3C2AO00443 1686 aa9.81□□□□□ -0.84
COL6A3-208ENST00000468792 PPM1GO15355 546 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-208ENST00000468792 GNAI1P63096 354 aa9.81□□□□□ -0.84
COL6A3-208ENST00000468792 EIF4A2Q14240 407 aaKnown RBP9.81□□□□□ -0.84
COL6A3-208ENST00000468792 RRS1Q15050 365 aaKnown RBP9.81□□□□□ -0.84
COL6A3-208ENST00000468792 MST1RQ04912 1400 aa9.81□□□□□ -0.84
COL6A3-208ENST00000468792 RGPD8O14715 1765 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-208ENST00000468792 RTL1A6NKG5 1358 aa9.8□□□□□ -0.84
COL6A3-208ENST00000468792 FBLN1P23142 703 aa9.8□□□□□ -0.84
COL6A3-208ENST00000468792 HAP1P54257 671 aaPredicted RBP9.8□□□□□ -0.84
COL6A3-208ENST00000468792 PHACTR3Q96KR7 559 aa9.8□□□□□ -0.84
COL6A3-208ENST00000468792 CFAP44Q96MT7 982 aa9.8□□□□□ -0.84
COL6A3-208ENST00000468792 PHF8Q9UPP1 1060 aa9.8□□□□□ -0.84
COL6A3-208ENST00000468792 PEAK1Q9H792 1746 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 IPO8O15397 1037 aaKnown RBP9.79□□□□□ -0.84
COL6A3-208ENST00000468792 EXOSC9Q06265 439 aaKnown RBP9.79□□□□□ -0.84
COL6A3-208ENST00000468792 ZKSCAN2Q63HK3 967 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 PMFBP1Q8TBY8 1022 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 ARHGAP45Q92619 1136 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 CLUAP1Q96AJ1 413 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 MAP3K19Q56UN5 1328 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 KIF16BQ96L93 1317 aa9.79□□□□□ -0.84
COL6A3-208ENST00000468792 PHRF1Q9P1Y6 1649 aaKnown RBP9.78□□□□□ -0.84
COL6A3-208ENST00000468792 HTATSF1O43719 755 aaKnown RBP9.78□□□□□ -0.84
COL6A3-208ENST00000468792 HMOX1P09601 288 aa9.78□□□□□ -0.84
COL6A3-208ENST00000468792 CANXP27824 592 aaKnown RBP9.78□□□□□ -0.84
COL6A3-208ENST00000468792 MARF1Q9Y4F3 1742 aaKnown RBP9.78□□□□□ -0.84
COL6A3-208ENST00000468792 IGSF1Q8N6C5 1336 aa9.78□□□□□ -0.84
COL6A3-208ENST00000468792 DCCP43146 1447 aa9.77□□□□□ -0.85
COL6A3-208ENST00000468792 NUTM2FA1L443 756 aa9.77□□□□□ -0.85
COL6A3-208ENST00000468792 NLRP6P59044 892 aa9.77□□□□□ -0.85
COL6A3-208ENST00000468792 HSP90AB2PQ58FF8 381 aa9.77□□□□□ -0.85
COL6A3-208ENST00000468792 TSR2Q969E8 191 aaKnown RBP9.77□□□□□ -0.85
COL6A3-208ENST00000468792 U3KPZ7 1027 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-208ENST00000468792 MVPQ14764 893 aaKnown RBP9.76□□□□□ -0.85
COL6A3-208ENST00000468792 SULT6B1Q6IMI4 303 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 ATF7IPQ6VMQ6 1270 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 DZIP1LQ8IYY4 767 aaKnown RBP9.76□□□□□ -0.85
COL6A3-208ENST00000468792 KCNH5Q8NCM2 988 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 SSH1Q8WYL5 1049 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 CHMP4BQ9H444 224 aaKnown RBP9.76□□□□□ -0.85
COL6A3-208ENST00000468792 BABAM1Q9NWV8 329 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 DLG5Q8TDM6 1919 aa9.76□□□□□ -0.85
COL6A3-208ENST00000468792 KIAA0232Q92628 1395 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 CHL1O00533 1208 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 VAMP4O75379 141 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 ABTB2Q8N961 1025 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 C19orf44Q9H6X5 657 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 SMC4Q9NTJ3 1288 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 DDX19BQ9UMR2 479 aa9.75□□□□□ -0.85
COL6A3-208ENST00000468792 ATF5Q9Y2D1 282 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-208ENST00000468792 KIF1AQ12756 1690 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 NFAT5O94916 1531 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 HOXC9P31274 260 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 AMPHP49418 695 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 GAS2L2Q8NHY3 880 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 PANK1Q8TE04 598 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 IP6K1Q92551 441 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 FRAT1Q92837 279 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-208ENST00000468792 BACH2Q9BYV9 841 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 COG6Q9Y2V7 657 aa9.74□□□□□ -0.85
COL6A3-208ENST00000468792 SOS1Q07889 1333 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-208ENST00000468792 SLIT3O75094 1523 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 RLBP1P12271 317 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 TRIM27P14373 513 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 AEBP1Q8IUX7 1158 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 FTSJ3Q8IY81 847 aaKnown RBP9.73□□□□□ -0.85
COL6A3-208ENST00000468792 MBIPQ9NS73 344 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 CRB1P82279 1406 aa9.73□□□□□ -0.85
COL6A3-208ENST00000468792 PDE4AP27815 886 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 PSME1Q06323 249 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 HDAC1Q13547 482 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-208ENST00000468792 ESCO1Q5FWF5 840 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 MRPL50Q8N5N7 158 aaKnown RBP9.72□□□□□ -0.85
COL6A3-208ENST00000468792 EYA1Q99502 592 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 RWDD1Q9H446 243 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-208ENST00000468792 NOB1Q9ULX3 412 aaKnown RBP9.72□□□□□ -0.85
COL6A3-208ENST00000468792 USP19O94966 1318 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 PLEKHG2Q9H7P9 1386 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 NCAPD2Q15021 1401 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 C1orf167Q5SNV9 1468 aa9.72□□□□□ -0.85
COL6A3-208ENST00000468792 PROSER2Q86WR7 435 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-208ENST00000468792 LMTK3Q96Q04 1460 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms