RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 AATKQ6ZMQ8 1374 aa16.53■□□□□ 0.24
COL28A1-204ENST00000444268 MAP2P11137 1827 aaKnown RBP16.52■□□□□ 0.23
COL28A1-204ENST00000444268 FCHSD2O94868 740 aa16.51■□□□□ 0.23
COL28A1-204ENST00000444268 FBLN1P23142 703 aa16.51■□□□□ 0.23
COL28A1-204ENST00000444268 RARSP54136 660 aaKnown RBP16.51■□□□□ 0.23
COL28A1-204ENST00000444268 KIF1AQ12756 1690 aa16.51■□□□□ 0.23
COL28A1-204ENST00000444268 TMPOP42166 694 aaKnown RBP16.51■□□□□ 0.23
COL28A1-204ENST00000444268 SLAIN2Q9P270 581 aa16.51■□□□□ 0.23
COL28A1-204ENST00000444268 MSH5O43196 834 aa16.5■□□□□ 0.23
COL28A1-204ENST00000444268 PSME1Q06323 249 aa16.5■□□□□ 0.23
COL28A1-204ENST00000444268 PIK3C2AO00443 1686 aa16.5■□□□□ 0.23
COL28A1-204ENST00000444268 PAK3O75914 559 aaPredicted RBP16.49■□□□□ 0.23
COL28A1-204ENST00000444268 NUTM2GQ5VZR2 741 aa16.49■□□□□ 0.23
COL28A1-204ENST00000444268 BRINP3Q76B58 766 aa16.49■□□□□ 0.23
COL28A1-204ENST00000444268 PDE4AP27815 886 aa16.49■□□□□ 0.23
COL28A1-204ENST00000444268 BACH2Q9BYV9 841 aa16.49■□□□□ 0.23
COL28A1-204ENST00000444268 POLKQ9UBT6 870 aa16.48■□□□□ 0.23
COL28A1-204ENST00000444268 KRT28Q7Z3Y7 464 aa16.47■□□□□ 0.23
COL28A1-204ENST00000444268 COG3Q96JB2 828 aa16.47■□□□□ 0.23
COL28A1-204ENST00000444268 TTC21AQ8NDW8 1320 aa16.46■□□□□ 0.23
COL28A1-204ENST00000444268 CALD1Q05682 793 aaKnown RBP16.46■□□□□ 0.23
COL28A1-204ENST00000444268 OVOS2A0A0J9YW53 1432 aa16.46■□□□□ 0.23
COL28A1-204ENST00000444268 OVOS2Q6IE36 1432 aa16.46■□□□□ 0.23
COL28A1-204ENST00000444268 TRPM3Q9HCF6 1732 aaPredicted RBP16.46■□□□□ 0.23
COL28A1-204ENST00000444268 CLUAP1Q96AJ1 413 aa16.46■□□□□ 0.22
COL28A1-204ENST00000444268 MARF1Q9Y4F3 1742 aaKnown RBP16.45■□□□□ 0.22
COL28A1-204ENST00000444268 IPO9Q96P70 1041 aaKnown RBP16.45■□□□□ 0.22
COL28A1-204ENST00000444268 SOX12O15370 315 aa16.44■□□□□ 0.22
COL28A1-204ENST00000444268 ABTB2Q8N961 1025 aa16.44■□□□□ 0.22
COL28A1-204ENST00000444268 FRAT1Q92837 279 aaPredicted RBP16.44■□□□□ 0.22
COL28A1-204ENST00000444268 TRIM35Q9UPQ4 493 aa16.44■□□□□ 0.22
COL28A1-204ENST00000444268 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 RIPK4P57078 832 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 NOP58Q9Y2X3 529 aaKnown RBP16.43■□□□□ 0.22
COL28A1-204ENST00000444268 PXDNQ92626 1479 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 NLRP6P59044 892 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 ZNF428Q96B54 188 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 RSPH6AQ9H0K4 717 aa16.43■□□□□ 0.22
COL28A1-204ENST00000444268 LMOD2Q6P5Q4 547 aa16.42■□□□□ 0.22
COL28A1-204ENST00000444268 NPHP3Q7Z494 1330 aa16.42■□□□□ 0.22
COL28A1-204ENST00000444268 PPM1GO15355 546 aaPredicted RBP16.41■□□□□ 0.22
COL28A1-204ENST00000444268 RRS1Q15050 365 aaKnown RBP16.41■□□□□ 0.22
COL28A1-204ENST00000444268 ZKSCAN2Q63HK3 967 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 USP31Q70CQ4 1352 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 PRKAR2BP31323 418 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 LMOD3Q0VAK6 560 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 PANK1Q8TE04 598 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 COG6Q9Y2V7 657 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 EMILIN1Q9Y6C2 1016 aa16.41■□□□□ 0.22
COL28A1-204ENST00000444268 ROBO1Q9Y6N7 1651 aa16.4■□□□□ 0.22
COL28A1-204ENST00000444268 ALS2Q96Q42 1657 aa16.4■□□□□ 0.22
COL28A1-204ENST00000444268 USP54Q70EL1 1684 aa16.39■□□□□ 0.21
COL28A1-204ENST00000444268 IL13P35225 146 aa16.39■□□□□ 0.21
COL28A1-204ENST00000444268 NFE2L2Q16236 605 aa16.39■□□□□ 0.21
COL28A1-204ENST00000444268 KIF16BQ96L93 1317 aa16.39■□□□□ 0.21
COL28A1-204ENST00000444268 EXOSC9Q06265 439 aaKnown RBP16.38■□□□□ 0.21
COL28A1-204ENST00000444268 NHSL1Q5SYE7 1610 aa16.38■□□□□ 0.21
COL28A1-204ENST00000444268 FAM161AQ3B820 660 aa16.38■□□□□ 0.21
COL28A1-204ENST00000444268 FTSJ3Q8IY81 847 aaKnown RBP16.38■□□□□ 0.21
COL28A1-204ENST00000444268 TSR2Q969E8 191 aaKnown RBP16.38■□□□□ 0.21
COL28A1-204ENST00000444268 SMC4Q9NTJ3 1288 aa16.38■□□□□ 0.21
COL28A1-204ENST00000444268 ZBTB47Q9UFB7 747 aaPredicted RBP16.38■□□□□ 0.21
COL28A1-204ENST00000444268 PIP4K2BP78356 416 aa16.37■□□□□ 0.21
COL28A1-204ENST00000444268 MVPQ14764 893 aaKnown RBP16.37■□□□□ 0.21
COL28A1-204ENST00000444268 ALDH1L2Q3SY69 923 aa16.37■□□□□ 0.21
COL28A1-204ENST00000444268 DZIP1LQ8IYY4 767 aaKnown RBP16.37■□□□□ 0.21
COL28A1-204ENST00000444268 VIRMAQ69YN4 1812 aaKnown RBP16.37■□□□□ 0.21
COL28A1-204ENST00000444268 IPO8O15397 1037 aaKnown RBP16.36■□□□□ 0.21
COL28A1-204ENST00000444268 TNS3Q68CZ2 1445 aa16.36■□□□□ 0.21
COL28A1-204ENST00000444268 DDRGK1Q96HY6 314 aa16.36■□□□□ 0.21
COL28A1-204ENST00000444268 SOS2Q07890 1332 aaPredicted RBP16.36■□□□□ 0.21
COL28A1-204ENST00000444268 SBNO1A3KN83 1393 aa16.36■□□□□ 0.21
COL28A1-204ENST00000444268 PEAK1Q9H792 1746 aa16.36■□□□□ 0.21
COL28A1-204ENST00000444268 SPATA31A3Q5VYP0 1347 aa16.35■□□□□ 0.21
COL28A1-204ENST00000444268 CERKQ8TCT0 537 aa16.35■□□□□ 0.21
COL28A1-204ENST00000444268 BCL2L13Q9BXK5 485 aa16.35■□□□□ 0.21
COL28A1-204ENST00000444268 MED1Q15648 1581 aaPredicted RBP16.35■□□□□ 0.21
COL28A1-204ENST00000444268 UBAP1LF5GYI3 381 aa16.34■□□□□ 0.21
COL28A1-204ENST00000444268 GNAI1P63096 354 aa16.34■□□□□ 0.21
COL28A1-204ENST00000444268 CABLES1Q8TDN4 633 aa16.34■□□□□ 0.21
COL28A1-204ENST00000444268 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
COL28A1-204ENST00000444268 IFT57Q9NWB7 429 aa16.34■□□□□ 0.21
COL28A1-204ENST00000444268 BRPF1P55201 1214 aaPredicted RBP16.33■□□□□ 0.21
COL28A1-204ENST00000444268 DDX19BQ9UMR2 479 aa16.33■□□□□ 0.21
COL28A1-204ENST00000444268 MAP3K19Q56UN5 1328 aa16.33■□□□□ 0.21
COL28A1-204ENST00000444268 NFAT5O94916 1531 aa16.33■□□□□ 0.2
COL28A1-204ENST00000444268 TOM1O60784 492 aa16.33■□□□□ 0.2
COL28A1-204ENST00000444268 ATF7IPQ6VMQ6 1270 aa16.33■□□□□ 0.2
COL28A1-204ENST00000444268 USP19O94966 1318 aa16.33■□□□□ 0.2
COL28A1-204ENST00000444268 DLG5Q8TDM6 1919 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 SLIT3O75094 1523 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 IGHDP01880 384 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 HMOX1P09601 288 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 RLBP1P12271 317 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 SSH1Q8WYL5 1049 aa16.32■□□□□ 0.2
COL28A1-204ENST00000444268 NPM2Q86SE8 214 aaKnown RBP16.31■□□□□ 0.2
COL28A1-204ENST00000444268 CHMP4BQ9H444 224 aaKnown RBP16.31■□□□□ 0.2
COL28A1-204ENST00000444268 ZBTB7CA1YPR0 619 aa16.31■□□□□ 0.2
COL28A1-204ENST00000444268 GCP02774 474 aa16.31■□□□□ 0.2
COL28A1-204ENST00000444268 AHDC1Q5TGY3 1603 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms