RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 MAP3K19Q56UN5 1328 aa7.78□□□□□ -1.16
VPS50-205ENST00000441602 EIF4A2Q14240 407 aaKnown RBP7.78□□□□□ -1.16
VPS50-205ENST00000441602 TMEM94Q12767 1356 aa7.78□□□□□ -1.16
VPS50-205ENST00000441602 HSPA2P54652 639 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 AAMPQ13685 434 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 ZNF428Q96B54 188 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 SULT6B1Q6IMI4 303 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 KRT28Q7Z3Y7 464 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 GAS2L2Q8NHY3 880 aa7.77□□□□□ -1.17
VPS50-205ENST00000441602 C1orf167Q5SNV9 1468 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 LMOD2Q6P5Q4 547 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 NPHP3Q7Z494 1330 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 FBLN1P23142 703 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 PDE3AQ14432 1141 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 RTF1Q92541 710 aaKnown RBP7.76□□□□□ -1.17
VPS50-205ENST00000441602 RBM33Q96EV2 1170 aaKnown RBP7.76□□□□□ -1.17
VPS50-205ENST00000441602 B4GALNT3Q6L9W6 998 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 IFT57Q9NWB7 429 aa7.76□□□□□ -1.17
VPS50-205ENST00000441602 USP54Q70EL1 1684 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 IPO8O15397 1037 aaKnown RBP7.75□□□□□ -1.17
VPS50-205ENST00000441602 NUTM2GQ5VZR2 741 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 EXOC6Q8TAG9 804 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 FANCIQ9NVI1 1328 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 KDM4FA0A1W2PPD8 638 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 FOXO3O43524 673 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 HSP90AB2PQ58FF8 381 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 CRBNQ96SW2 442 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 TRIM35Q9UPQ4 493 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 RGPD8O14715 1765 aaPredicted RBP7.75□□□□□ -1.17
VPS50-205ENST00000441602 HOXC9P31274 260 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 IP6K1Q92551 441 aa7.75□□□□□ -1.17
VPS50-205ENST00000441602 CHMP4BQ9H444 224 aaKnown RBP7.75□□□□□ -1.17
VPS50-205ENST00000441602 PIK3C2AO00443 1686 aa7.74□□□□□ -1.17
VPS50-205ENST00000441602 ZBTB7CA1YPR0 619 aa7.74□□□□□ -1.17
VPS50-205ENST00000441602 ORAI2Q96SN7 254 aa7.74□□□□□ -1.17
VPS50-205ENST00000441602 SPINK5Q9NQ38 1064 aaPredicted RBP7.74□□□□□ -1.17
VPS50-205ENST00000441602 LAS1LQ9Y4W2 734 aaKnown RBP7.74□□□□□ -1.17
VPS50-205ENST00000441602 KIF16BQ96L93 1317 aa7.74□□□□□ -1.17
VPS50-205ENST00000441602 LMTK3Q96Q04 1460 aa7.74□□□□□ -1.17
VPS50-205ENST00000441602 HTATSF1O43719 755 aaKnown RBP7.73□□□□□ -1.17
VPS50-205ENST00000441602 PLIN1O60240 522 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 RARSP54136 660 aaKnown RBP7.73□□□□□ -1.17
VPS50-205ENST00000441602 EXOSC9Q06265 439 aaKnown RBP7.73□□□□□ -1.17
VPS50-205ENST00000441602 ZKSCAN2Q63HK3 967 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 SMC4Q9NTJ3 1288 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 IGSF1Q8N6C5 1336 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 MST1RQ04912 1400 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 FRAT1Q92837 279 aaPredicted RBP7.73□□□□□ -1.17
VPS50-205ENST00000441602 ALDH1L2Q3SY69 923 aa7.73□□□□□ -1.17
VPS50-205ENST00000441602 FTSJ3Q8IY81 847 aaKnown RBP7.73□□□□□ -1.17
VPS50-205ENST00000441602 LTV1Q96GA3 475 aaPredicted RBP7.72□□□□□ -1.17
VPS50-205ENST00000441602 PHACTR3Q96KR7 559 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 CHMP4AQ9BY43 222 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 USP19O94966 1318 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 GCP02774 474 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 TSR2Q969E8 191 aaKnown RBP7.72□□□□□ -1.17
VPS50-205ENST00000441602 CFAP44Q96MT7 982 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 EYA1Q99502 592 aa7.72□□□□□ -1.17
VPS50-205ENST00000441602 KDRP35968 1356 aa7.71□□□□□ -1.17
VPS50-205ENST00000441602 BCAR3O75815 825 aa7.71□□□□□ -1.17
VPS50-205ENST00000441602 AEBP1Q8IUX7 1158 aa7.71□□□□□ -1.17
VPS50-205ENST00000441602 SLIT3O75094 1523 aa7.71□□□□□ -1.18
VPS50-205ENST00000441602 PLEKHO1Q53GL0 409 aaPredicted RBP7.71□□□□□ -1.18
VPS50-205ENST00000441602 PEAK1Q9H792 1746 aa7.7□□□□□ -1.18
VPS50-205ENST00000441602 XPCQ01831 940 aaPredicted RBP7.7□□□□□ -1.18
VPS50-205ENST00000441602 CENPQQ7L2Z9 268 aaPredicted RBP7.7□□□□□ -1.18
VPS50-205ENST00000441602 AMOTQ4VCS5 1084 aa7.7□□□□□ -1.18
VPS50-205ENST00000441602 ARHGEF25Q86VW2 580 aa7.7□□□□□ -1.18
VPS50-205ENST00000441602 DZIP1LQ8IYY4 767 aaKnown RBP7.7□□□□□ -1.18
VPS50-205ENST00000441602 TNS3Q68CZ2 1445 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 BABAM1Q9NWV8 329 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 NFAT5O94916 1531 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 GNAT3A8MTJ3 354 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 ZNF853P0CG23 659 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 API5Q9BZZ5 524 aaKnown RBP7.69□□□□□ -1.18
VPS50-205ENST00000441602 TWISTNBQ3B726 338 aaPredicted RBP7.69□□□□□ -1.18
VPS50-205ENST00000441602 SOS1Q07889 1333 aaPredicted RBP7.69□□□□□ -1.18
VPS50-205ENST00000441602 RGPD1P0DJD0 1748 aa7.69□□□□□ -1.18
VPS50-205ENST00000441602 TCERG1O14776 1098 aaKnown RBP7.68□□□□□ -1.18
VPS50-205ENST00000441602 MBIPQ9NS73 344 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 DDX19BQ9UMR2 479 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 MAP3K5Q99683 1374 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 C1orf141Q5JVX7 400 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 ANKRD24Q8TF21 1146 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 KIAA0232Q92628 1395 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 CSB-PGBD3P0DP91 1061 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 BRPF1P55201 1214 aaPredicted RBP7.68□□□□□ -1.18
VPS50-205ENST00000441602 MTHFSDQ2M296 383 aaKnown RBP7.68□□□□□ -1.18
VPS50-205ENST00000441602 C20orf194Q5TEA3 1177 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 ATF7IPQ6VMQ6 1270 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 SSH1Q8WYL5 1049 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 ARHGAP45Q92619 1136 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 CLUAP1Q96AJ1 413 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 THUMPD2Q9BTF0 503 aaKnown RBP7.68□□□□□ -1.18
VPS50-205ENST00000441602 BCL2L13Q9BXK5 485 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 TSPYL4Q9UJ04 414 aa7.68□□□□□ -1.18
VPS50-205ENST00000441602 ZNF335Q9H4Z2 1342 aaPredicted RBP7.68□□□□□ -1.18
VPS50-205ENST00000441602 PLEKHG5O94827 1062 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 SPATA31A3Q5VYP0 1347 aa7.67□□□□□ -1.18
VPS50-205ENST00000441602 SLAIN2Q9P270 581 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms