RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 USP31Q70CQ4 1352 aa13.41□□□□□ -0.26
HDAC9-210ENST00000428307 FAM83GA6ND36 823 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 AMPHP49418 695 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 ESCO1Q5FWF5 840 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 SSH1Q8WYL5 1049 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 PHF8Q9UPP1 1060 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 KDM2BQ8NHM5 1336 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 DCTN1Q14203 1278 aa13.4□□□□□ -0.26
HDAC9-210ENST00000428307 NPHP4O75161 1426 aaPredicted RBP13.4□□□□□ -0.26
HDAC9-210ENST00000428307 SETD1BQ9UPS6 1966 aaKnown RBP13.39□□□□□ -0.27
HDAC9-210ENST00000428307 ANKARQ7Z5J8 1434 aa13.39□□□□□ -0.27
HDAC9-210ENST00000428307 CT47B1P0C2W7 299 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-210ENST00000428307 CENPQQ7L2Z9 268 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-210ENST00000428307 NRKQ7Z2Y5 1582 aa13.39□□□□□ -0.27
HDAC9-210ENST00000428307 ELL2O00472 640 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-210ENST00000428307 TCERG1O14776 1098 aaKnown RBP13.38□□□□□ -0.27
HDAC9-210ENST00000428307 RGPD8O14715 1765 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-210ENST00000428307 PSME1Q06323 249 aa13.37□□□□□ -0.27
HDAC9-210ENST00000428307 ZKSCAN2Q63HK3 967 aa13.37□□□□□ -0.27
HDAC9-210ENST00000428307 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
HDAC9-210ENST00000428307 IGHDP01880 384 aa13.37□□□□□ -0.27
HDAC9-210ENST00000428307 CALD1Q05682 793 aaKnown RBP13.37□□□□□ -0.27
HDAC9-210ENST00000428307 FTSJ3Q8IY81 847 aaKnown RBP13.36□□□□□ -0.27
HDAC9-210ENST00000428307 ORAI2Q96SN7 254 aa13.36□□□□□ -0.27
HDAC9-210ENST00000428307 GNAI1P63096 354 aa13.36□□□□□ -0.27
HDAC9-210ENST00000428307 LMOD3Q0VAK6 560 aa13.36□□□□□ -0.27
HDAC9-210ENST00000428307 PROSER2Q86WR7 435 aaPredicted RBP13.36□□□□□ -0.27
HDAC9-210ENST00000428307 MBIPQ9NS73 344 aa13.36□□□□□ -0.27
HDAC9-210ENST00000428307 NOB1Q9ULX3 412 aaKnown RBP13.36□□□□□ -0.27
HDAC9-210ENST00000428307 FOXO3O43524 673 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 TRIM27P14373 513 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 XPCQ01831 940 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-210ENST00000428307 DZIP1LQ8IYY4 767 aaKnown RBP13.35□□□□□ -0.27
HDAC9-210ENST00000428307 TSPYL6Q8N831 410 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 IFT57Q9NWB7 429 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 FLT4P35916 1363 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 ZNF142P52746 1687 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-210ENST00000428307 SBNO1A3KN83 1393 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 MCM10Q7L590 875 aa13.35□□□□□ -0.27
HDAC9-210ENST00000428307 LTV1Q96GA3 475 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-210ENST00000428307 CFAP44Q96MT7 982 aa13.34□□□□□ -0.27
HDAC9-210ENST00000428307 EYA1Q99502 592 aa13.34□□□□□ -0.27
HDAC9-210ENST00000428307 ZNF853P0CG23 659 aa13.34□□□□□ -0.27
HDAC9-210ENST00000428307 ADGRL3Q9HAR2 1447 aa13.33□□□□□ -0.27
HDAC9-210ENST00000428307 CHD2O14647 1828 aaKnown RBP13.33□□□□□ -0.28
HDAC9-210ENST00000428307 PDE4AP27815 886 aa13.33□□□□□ -0.28
HDAC9-210ENST00000428307 RGS3P49796 1198 aa13.33□□□□□ -0.28
HDAC9-210ENST00000428307 ATF7IPQ6VMQ6 1270 aa13.33□□□□□ -0.28
HDAC9-210ENST00000428307 PCDHB15Q9Y5E8 787 aa13.33□□□□□ -0.28
HDAC9-210ENST00000428307 ZBTB7CA1YPR0 619 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 VAMP4O75379 141 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 HOXC9P31274 260 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 MVPQ14764 893 aaKnown RBP13.32□□□□□ -0.28
HDAC9-210ENST00000428307 PEAK1Q9H792 1746 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 MS4A1P11836 297 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 LMOD2Q6P5Q4 547 aa13.32□□□□□ -0.28
HDAC9-210ENST00000428307 HSPA2P54652 639 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 MTHFSDQ2M296 383 aaKnown RBP13.31□□□□□ -0.28
HDAC9-210ENST00000428307 ITPRIPQ8IWB1 547 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 C8orf58Q8NAV2 365 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 FMN2Q9NZ56 1722 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 NALCNQ8IZF0 1738 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 TWISTNBQ3B726 338 aaPredicted RBP13.31□□□□□ -0.28
HDAC9-210ENST00000428307 ALDH1L2Q3SY69 923 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 PIK3C2AO00443 1686 aa13.31□□□□□ -0.28
HDAC9-210ENST00000428307 IPO8O15397 1037 aaKnown RBP13.3□□□□□ -0.28
HDAC9-210ENST00000428307 MSH5O43196 834 aa13.3□□□□□ -0.28
HDAC9-210ENST00000428307 BACH2Q9BYV9 841 aa13.3□□□□□ -0.28
HDAC9-210ENST00000428307 KIF16BQ96L93 1317 aa13.3□□□□□ -0.28
HDAC9-210ENST00000428307 TMEM57Q8N5G2 664 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 IGSF1Q8N6C5 1336 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 ARHGEF10O15013 1369 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 KRT24Q2M2I5 525 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 C19orf44Q9H6X5 657 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 MIS18AQ9NYP9 233 aa13.29□□□□□ -0.28
HDAC9-210ENST00000428307 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
HDAC9-210ENST00000428307 ZNF428Q96B54 188 aa13.28□□□□□ -0.28
HDAC9-210ENST00000428307 AAMPQ13685 434 aa13.28□□□□□ -0.28
HDAC9-210ENST00000428307 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
HDAC9-210ENST00000428307 NPM2Q86SE8 214 aaKnown RBP13.27□□□□□ -0.29
HDAC9-210ENST00000428307 MRPL50Q8N5N7 158 aaKnown RBP13.27□□□□□ -0.29
HDAC9-210ENST00000428307 DDX19BQ9UMR2 479 aa13.27□□□□□ -0.29
HDAC9-210ENST00000428307 KDRP35968 1356 aa13.27□□□□□ -0.29
HDAC9-210ENST00000428307 CHL1O00533 1208 aa13.27□□□□□ -0.29
HDAC9-210ENST00000428307 GCP02774 474 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 KRT28Q7Z3Y7 464 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 IP6K1Q92551 441 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 RWDD1Q9H446 243 aaPredicted RBP13.25□□□□□ -0.29
HDAC9-210ENST00000428307 ATF3P18847 181 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 KCNH5Q8NCM2 988 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 GAS2L2Q8NHY3 880 aa13.25□□□□□ -0.29
HDAC9-210ENST00000428307 ANP32AP39687 249 aaKnown RBP13.24□□□□□ -0.29
HDAC9-210ENST00000428307 BRPF1P55201 1214 aaPredicted RBP13.24□□□□□ -0.29
HDAC9-210ENST00000428307 DDX17Q92841 729 aaKnown RBP13.24□□□□□ -0.29
HDAC9-210ENST00000428307 TMEM94Q12767 1356 aa13.24□□□□□ -0.29
HDAC9-210ENST00000428307 KIF24Q5T7B8 1368 aa13.24□□□□□ -0.29
HDAC9-210ENST00000428307 NBPF6Q5VWK0 638 aa13.23□□□□□ -0.29
HDAC9-210ENST00000428307 NBPF4Q96M43 638 aa13.23□□□□□ -0.29
HDAC9-210ENST00000428307 ZBTB40Q9NUA8 1239 aa13.23□□□□□ -0.29
HDAC9-210ENST00000428307 DLG5Q8TDM6 1919 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms