RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 XPCQ01831 940 aaPredicted RBP10.69□□□□□ -0.7
USP40-203ENST00000427112 USHBP1Q8N6Y0 703 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 SLC26A8Q96RN1 970 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 NSFL1CQ9UNZ2 370 aaKnown RBP10.69□□□□□ -0.7
USP40-203ENST00000427112 MRE11P49959 708 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 MYOM1P52179 1685 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 ZNF518AQ6AHZ1 1483 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 DDX11L8A8MPP1 907 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 EIF2S2P20042 333 aaKnown RBP10.69□□□□□ -0.7
USP40-203ENST00000427112 NEK4P51957 841 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 NFE2L2Q16236 605 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 FAM13BQ9NYF5 915 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 ATP7AQ04656 1500 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 ASXL2Q76L83 1435 aa10.69□□□□□ -0.7
USP40-203ENST00000427112 ANKRD36BQ8N2N9 1353 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 ABCC1P33527 1531 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 ZNF692Q9BU19 519 aaPredicted RBP10.68□□□□□ -0.7
USP40-203ENST00000427112 PPIP5K1Q6PFW1 1433 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 COG3Q96JB2 828 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 ANO2Q9NQ90 1003 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 R3HCC1Q9Y3T6 440 aaKnown RBP10.68□□□□□ -0.7
USP40-203ENST00000427112 TRPM2O94759 1503 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 SYCE3A1L190 88 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 GOLGA6L22H0YM25 854 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 SDSP20132 328 aa10.68□□□□□ -0.7
USP40-203ENST00000427112 ANP32BQ92688 251 aaKnown RBP10.68□□□□□ -0.7
USP40-203ENST00000427112 ZNF830Q96NB3 372 aaPredicted RBP10.68□□□□□ -0.7
USP40-203ENST00000427112 BAG4O95429 457 aaKnown RBP10.67□□□□□ -0.7
USP40-203ENST00000427112 CALD1Q05682 793 aaKnown RBP10.67□□□□□ -0.7
USP40-203ENST00000427112 CCDC27Q2M243 656 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 PLEKHM2Q8IWE5 1019 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 ZMYND15Q9H091 742 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 NPC1L1Q9UHC9 1359 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 ZCCHC11Q5TAX3 1644 aaKnown RBP10.67□□□□□ -0.7
USP40-203ENST00000427112 CDC45O75419 566 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 TSC1Q92574 1164 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 CEP152O94986 1710 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 CPA1P15085 419 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 LMOD2Q6P5Q4 547 aa10.67□□□□□ -0.7
USP40-203ENST00000427112 IQGAP1P46940 1657 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 ZFYVE16Q7Z3T8 1539 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 NUTM1Q86Y26 1132 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 ESF1Q9H501 851 aaKnown RBP10.66□□□□□ -0.7
USP40-203ENST00000427112 PPFIA3O75145 1194 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 PTMAP06454 111 aaKnown RBP10.66□□□□□ -0.7
USP40-203ENST00000427112 FCHSD2O94868 740 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 GNAI1P63096 354 aa10.66□□□□□ -0.7
USP40-203ENST00000427112 FSD2A1L4K1 749 aa10.65□□□□□ -0.7
USP40-203ENST00000427112 PRIM1P49642 420 aaKnown RBP10.65□□□□□ -0.7
USP40-203ENST00000427112 SPHKAPQ2M3C7 1700 aa10.65□□□□□ -0.7
USP40-203ENST00000427112 FKBP5Q13451 457 aaPredicted RBP10.65□□□□□ -0.7
USP40-203ENST00000427112 KIAA1211Q6ZU35 1233 aa10.65□□□□□ -0.7
USP40-203ENST00000427112 C17orf53Q8N3J3 647 aaPredicted RBP10.65□□□□□ -0.7
USP40-203ENST00000427112 CEBPAP49715 358 aaPredicted RBP10.65□□□□□ -0.71
USP40-203ENST00000427112 BMP2KLQ5H9B9 411 aa10.65□□□□□ -0.71
USP40-203ENST00000427112 NGEFQ8N5V2 710 aa10.65□□□□□ -0.71
USP40-203ENST00000427112 NUDT16Q96DE0 195 aaKnown RBP10.65□□□□□ -0.71
USP40-203ENST00000427112 MSNP26038 577 aaKnown RBP10.64□□□□□ -0.71
USP40-203ENST00000427112 DNTTIP2Q5QJE6 756 aaKnown RBP10.64□□□□□ -0.71
USP40-203ENST00000427112 RAB3GAP1Q15042 981 aa10.64□□□□□ -0.71
USP40-203ENST00000427112 TSPYL4Q9UJ04 414 aa10.64□□□□□ -0.71
USP40-203ENST00000427112 MROH2AA6NES4 1674 aa10.64□□□□□ -0.71
USP40-203ENST00000427112 RBSNQ9H1K0 784 aa10.63□□□□□ -0.71
USP40-203ENST00000427112 PALD1Q9ULE6 856 aa10.63□□□□□ -0.71
USP40-203ENST00000427112 NINLQ9Y2I6 1382 aa10.63□□□□□ -0.71
USP40-203ENST00000427112 STAC3Q96MF2 364 aa10.63□□□□□ -0.71
USP40-203ENST00000427112 RNF17Q9BXT8 1623 aaKnown RBP10.63□□□□□ -0.71
USP40-203ENST00000427112 MAP3K4Q9Y6R4 1608 aa10.63□□□□□ -0.71
USP40-203ENST00000427112 FOSBP53539 338 aa10.62□□□□□ -0.71
USP40-203ENST00000427112 FAM69CQ0P6D2 419 aa10.62□□□□□ -0.71
USP40-203ENST00000427112 RTEL1-TNFRSF6BF6WH68 1400 aa10.62□□□□□ -0.71
USP40-203ENST00000427112 TRHP20396 242 aaPredicted RBP10.62□□□□□ -0.71
USP40-203ENST00000427112 PLXNC1O60486 1568 aa10.62□□□□□ -0.71
USP40-203ENST00000427112 RBM25P49756 843 aaKnown RBP10.62□□□□□ -0.71
USP40-203ENST00000427112 MAPK8IP2Q13387 824 aaPredicted RBP10.62□□□□□ -0.71
USP40-203ENST00000427112 KIF13AQ9H1H9 1805 aa10.62□□□□□ -0.71
USP40-203ENST00000427112 UNC5CLQ8IV45 518 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 RTF1Q92541 710 aaKnown RBP10.61□□□□□ -0.71
USP40-203ENST00000427112 PRDM10Q9NQV6 1147 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 YEATS2Q9ULM3 1422 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 IL13P35225 146 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 EIF4A2Q14240 407 aaKnown RBP10.61□□□□□ -0.71
USP40-203ENST00000427112 TTC22Q5TAA0 569 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 GCC1Q96CN9 775 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 TCEANC2Q96MN5 208 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 TULP4Q9NRJ4 1543 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 CDK11BP21127 795 aaKnown RBP10.61□□□□□ -0.71
USP40-203ENST00000427112 AMPHP49418 695 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 ZSCAN23Q3MJ62 389 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 MSH6P52701 1360 aa10.61□□□□□ -0.71
USP40-203ENST00000427112 IQSEC2Q5JU85 1478 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 PNMA6EA0A0J9YXQ4 647 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 CEP85Q6P2H3 762 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 API5Q9BZZ5 524 aaKnown RBP10.6□□□□□ -0.71
USP40-203ENST00000427112 CLCN1P35523 988 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 OS9Q13438 667 aaPredicted RBP10.6□□□□□ -0.71
USP40-203ENST00000427112 CFAP44Q96MT7 982 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 USP26Q9BXU7 913 aa10.6□□□□□ -0.71
USP40-203ENST00000427112 GADD45BO75293 160 aaPredicted RBP10.59□□□□□ -0.71
USP40-203ENST00000427112 NGDNQ8NEJ9 315 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms