RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 NRKQ7Z2Y5 1582 aa19.4■□□□□ 0.7
GPC3-202ENST00000394299 ELL2O00472 640 aaPredicted RBP19.39■□□□□ 0.69
GPC3-202ENST00000394299 RGS3P49796 1198 aa19.39■□□□□ 0.69
GPC3-202ENST00000394299 PCDHB15Q9Y5E8 787 aa19.39■□□□□ 0.69
GPC3-202ENST00000394299 MAP3K19Q56UN5 1328 aa19.38■□□□□ 0.69
GPC3-202ENST00000394299 ZKSCAN2Q63HK3 967 aa19.38■□□□□ 0.69
GPC3-202ENST00000394299 BACH2Q9BYV9 841 aa19.38■□□□□ 0.69
GPC3-202ENST00000394299 NOB1Q9ULX3 412 aaKnown RBP19.38■□□□□ 0.69
GPC3-202ENST00000394299 XRN1Q8IZH2 1706 aaKnown RBP19.38■□□□□ 0.69
GPC3-202ENST00000394299 NLRP6P59044 892 aa19.37■□□□□ 0.69
GPC3-202ENST00000394299 TSPYL6Q8N831 410 aa19.37■□□□□ 0.69
GPC3-202ENST00000394299 PAK3O75914 559 aaPredicted RBP19.37■□□□□ 0.69
GPC3-202ENST00000394299 NPM2Q86SE8 214 aaKnown RBP19.37■□□□□ 0.69
GPC3-202ENST00000394299 MS4A1P11836 297 aa19.36■□□□□ 0.69
GPC3-202ENST00000394299 TRIM27P14373 513 aa19.36■□□□□ 0.69
GPC3-202ENST00000394299 USP31Q70CQ4 1352 aa19.36■□□□□ 0.69
GPC3-202ENST00000394299 CT47B1P0C2W7 299 aaPredicted RBP19.35■□□□□ 0.69
GPC3-202ENST00000394299 DZIP1LQ8IYY4 767 aaKnown RBP19.35■□□□□ 0.69
GPC3-202ENST00000394299 TTC21AQ8NDW8 1320 aa19.35■□□□□ 0.69
GPC3-202ENST00000394299 MBIPQ9NS73 344 aa19.35■□□□□ 0.69
GPC3-202ENST00000394299 PEAK1Q9H792 1746 aa19.34■□□□□ 0.69
GPC3-202ENST00000394299 FTSJ3Q8IY81 847 aaKnown RBP19.34■□□□□ 0.69
GPC3-202ENST00000394299 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
GPC3-202ENST00000394299 PIK3R4Q99570 1358 aa19.34■□□□□ 0.69
GPC3-202ENST00000394299 C14orf37Q86TY3 774 aa19.34■□□□□ 0.69
GPC3-202ENST00000394299 MVPQ14764 893 aaKnown RBP19.33■□□□□ 0.69
GPC3-202ENST00000394299 ADAMTSL3P82987 1691 aa19.33■□□□□ 0.68
GPC3-202ENST00000394299 ABTB2Q8N961 1025 aa19.33■□□□□ 0.68
GPC3-202ENST00000394299 AMPHP49418 695 aa19.32■□□□□ 0.68
GPC3-202ENST00000394299 VAMP4O75379 141 aa19.32■□□□□ 0.68
GPC3-202ENST00000394299 ZNF853P0CG23 659 aa19.32■□□□□ 0.68
GPC3-202ENST00000394299 ATF7IPQ6VMQ6 1270 aa19.32■□□□□ 0.68
GPC3-202ENST00000394299 MCM10Q7L590 875 aa19.32■□□□□ 0.68
GPC3-202ENST00000394299 C8orf58Q8NAV2 365 aa19.31■□□□□ 0.68
GPC3-202ENST00000394299 FOXO3O43524 673 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 GNAI1P63096 354 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 PHF8Q9UPP1 1060 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 PLEKHG5O94827 1062 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 ANP32EQ9BTT0 268 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 IFT57Q9NWB7 429 aa19.3■□□□□ 0.68
GPC3-202ENST00000394299 ESCO1Q5FWF5 840 aa19.29■□□□□ 0.68
GPC3-202ENST00000394299 ITPRIPQ8IWB1 547 aa19.29■□□□□ 0.68
GPC3-202ENST00000394299 TMEM57Q8N5G2 664 aa19.29■□□□□ 0.68
GPC3-202ENST00000394299 CFAP44Q96MT7 982 aa19.29■□□□□ 0.68
GPC3-202ENST00000394299 KRT24Q2M2I5 525 aa19.28■□□□□ 0.68
GPC3-202ENST00000394299 EYA1Q99502 592 aa19.28■□□□□ 0.68
GPC3-202ENST00000394299 ANKARQ7Z5J8 1434 aa19.28■□□□□ 0.68
GPC3-202ENST00000394299 LTV1Q96GA3 475 aaPredicted RBP19.28■□□□□ 0.68
GPC3-202ENST00000394299 DLG5Q8TDM6 1919 aa19.28■□□□□ 0.68
GPC3-202ENST00000394299 ANP32AP39687 249 aaKnown RBP19.27■□□□□ 0.68
GPC3-202ENST00000394299 PIK3C2AO00443 1686 aa19.27■□□□□ 0.68
GPC3-202ENST00000394299 NALCNQ8IZF0 1738 aa19.27■□□□□ 0.68
GPC3-202ENST00000394299 XPCQ01831 940 aaPredicted RBP19.27■□□□□ 0.67
GPC3-202ENST00000394299 CALD1Q05682 793 aaKnown RBP19.27■□□□□ 0.67
GPC3-202ENST00000394299 CHD2O14647 1828 aaKnown RBP19.27■□□□□ 0.67
GPC3-202ENST00000394299 SETD1BQ9UPS6 1966 aaKnown RBP19.27■□□□□ 0.67
GPC3-202ENST00000394299 LMOD3Q0VAK6 560 aa19.26■□□□□ 0.67
GPC3-202ENST00000394299 SBNO1A3KN83 1393 aa19.26■□□□□ 0.67
GPC3-202ENST00000394299 NPHP4O75161 1426 aaPredicted RBP19.26■□□□□ 0.67
GPC3-202ENST00000394299 MTHFSDQ2M296 383 aaKnown RBP19.26■□□□□ 0.67
GPC3-202ENST00000394299 TWISTNBQ3B726 338 aaPredicted RBP19.26■□□□□ 0.67
GPC3-202ENST00000394299 ALDH1L2Q3SY69 923 aa19.26■□□□□ 0.67
GPC3-202ENST00000394299 ORAI2Q96SN7 254 aa19.26■□□□□ 0.67
GPC3-202ENST00000394299 MIS18AQ9NYP9 233 aa19.26■□□□□ 0.67
GPC3-202ENST00000394299 FLT4P35916 1363 aa19.25■□□□□ 0.67
GPC3-202ENST00000394299 FMN2Q9NZ56 1722 aa19.25■□□□□ 0.67
GPC3-202ENST00000394299 MRPL50Q8N5N7 158 aaKnown RBP19.25■□□□□ 0.67
GPC3-202ENST00000394299 C8orf34Q49A92 452 aa19.25■□□□□ 0.67
GPC3-202ENST00000394299 HOXC9P31274 260 aa19.24■□□□□ 0.67
GPC3-202ENST00000394299 PSME1Q06323 249 aa19.24■□□□□ 0.67
GPC3-202ENST00000394299 IPO9Q96P70 1041 aaKnown RBP19.24■□□□□ 0.67
GPC3-202ENST00000394299 ZNF142P52746 1687 aaPredicted RBP19.23■□□□□ 0.67
GPC3-202ENST00000394299 KIF16BQ96L93 1317 aa19.23■□□□□ 0.67
GPC3-202ENST00000394299 ZBTB7CA1YPR0 619 aa19.22■□□□□ 0.67
GPC3-202ENST00000394299 IPO8O15397 1037 aaKnown RBP19.22■□□□□ 0.67
GPC3-202ENST00000394299 PDZRN3Q9UPQ7 1066 aa19.22■□□□□ 0.67
GPC3-202ENST00000394299 ERICH6Q7L0X2 663 aa19.21■□□□□ 0.67
GPC3-202ENST00000394299 DDX19BQ9UMR2 479 aa19.21■□□□□ 0.67
GPC3-202ENST00000394299 FAM161AQ3B820 660 aa19.21■□□□□ 0.67
GPC3-202ENST00000394299 USHBP1Q8N6Y0 703 aa19.21■□□□□ 0.67
GPC3-202ENST00000394299 RWDD1Q9H446 243 aaPredicted RBP19.21■□□□□ 0.67
GPC3-202ENST00000394299 AAMPQ13685 434 aa19.2■□□□□ 0.66
GPC3-202ENST00000394299 IGSF1Q8N6C5 1336 aa19.2■□□□□ 0.66
GPC3-202ENST00000394299 ARHGEF10O15013 1369 aa19.2■□□□□ 0.66
GPC3-202ENST00000394299 ADGRL3Q9HAR2 1447 aa19.19■□□□□ 0.66
GPC3-202ENST00000394299 RGPD1P0DJD0 1748 aa19.19■□□□□ 0.66
GPC3-202ENST00000394299 CHL1O00533 1208 aa19.19■□□□□ 0.66
GPC3-202ENST00000394299 PROSER2Q86WR7 435 aaPredicted RBP19.19■□□□□ 0.66
GPC3-202ENST00000394299 ZBTB40Q9NUA8 1239 aa19.19■□□□□ 0.66
GPC3-202ENST00000394299 NOP58Q9Y2X3 529 aaKnown RBP19.19■□□□□ 0.66
GPC3-202ENST00000394299 BRPF1P55201 1214 aaPredicted RBP19.18■□□□□ 0.66
GPC3-202ENST00000394299 ZNF428Q96B54 188 aa19.18■□□□□ 0.66
GPC3-202ENST00000394299 LMOD2Q6P5Q4 547 aa19.17■□□□□ 0.66
GPC3-202ENST00000394299 MARF1Q9Y4F3 1742 aaKnown RBP19.17■□□□□ 0.66
GPC3-202ENST00000394299 KDRP35968 1356 aa19.16■□□□□ 0.66
GPC3-202ENST00000394299 C1orf115Q9H7X2 142 aa19.16■□□□□ 0.66
GPC3-202ENST00000394299 RTF1Q92541 710 aaKnown RBP19.15■□□□□ 0.66
GPC3-202ENST00000394299 ZBTB47Q9UFB7 747 aaPredicted RBP19.15■□□□□ 0.66
GPC3-202ENST00000394299 CRB1P82279 1406 aa19.15■□□□□ 0.66
GPC3-202ENST00000394299 ZBTB7BO15156 539 aaPredicted RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms