RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 SPINK5Q9NQ38 1064 aaPredicted RBP11.31□□□□□ -0.6
TDP1-203ENST00000393454 MARF1Q9Y4F3 1742 aaKnown RBP11.31□□□□□ -0.6
TDP1-203ENST00000393454 RIPK4P57078 832 aa11.31□□□□□ -0.6
TDP1-203ENST00000393454 CCDC27Q2M243 656 aa11.31□□□□□ -0.6
TDP1-203ENST00000393454 USP54Q70EL1 1684 aa11.3□□□□□ -0.6
TDP1-203ENST00000393454 FLT4P35916 1363 aa11.3□□□□□ -0.6
TDP1-203ENST00000393454 WDR63Q8IWG1 891 aa11.3□□□□□ -0.6
TDP1-203ENST00000393454 DDX17Q92841 729 aaKnown RBP11.3□□□□□ -0.6
TDP1-203ENST00000393454 SULT6B1Q6IMI4 303 aa11.29□□□□□ -0.6
TDP1-203ENST00000393454 NCBP3Q53F19 620 aaKnown RBP11.29□□□□□ -0.6
TDP1-203ENST00000393454 TRMT2AQ8IZ69 625 aaKnown RBP11.29□□□□□ -0.6
TDP1-203ENST00000393454 KCNH5Q8NCM2 988 aa11.29□□□□□ -0.6
TDP1-203ENST00000393454 PHACTR3Q96KR7 559 aa11.29□□□□□ -0.6
TDP1-203ENST00000393454 HOXC9P31274 260 aa11.28□□□□□ -0.6
TDP1-203ENST00000393454 LTV1Q96GA3 475 aaPredicted RBP11.28□□□□□ -0.6
TDP1-203ENST00000393454 TRPM3Q9HCF6 1732 aaPredicted RBP11.28□□□□□ -0.6
TDP1-203ENST00000393454 RNF123Q5XPI4 1314 aa11.28□□□□□ -0.6
TDP1-203ENST00000393454 NPHP3Q7Z494 1330 aa11.28□□□□□ -0.6
TDP1-203ENST00000393454 AEBP1Q8IUX7 1158 aa11.28□□□□□ -0.6
TDP1-203ENST00000393454 RRP1P56182 461 aaKnown RBP11.27□□□□□ -0.61
TDP1-203ENST00000393454 NFE2L2Q16236 605 aa11.27□□□□□ -0.61
TDP1-203ENST00000393454 TRIM35Q9UPQ4 493 aa11.27□□□□□ -0.61
TDP1-203ENST00000393454 LTN1O94822 1766 aa11.27□□□□□ -0.61
TDP1-203ENST00000393454 KIF24Q5T7B8 1368 aa11.26□□□□□ -0.61
TDP1-203ENST00000393454 GCP02774 474 aa11.26□□□□□ -0.61
TDP1-203ENST00000393454 MYH16Q9H6N6 1097 aa11.26□□□□□ -0.61
TDP1-203ENST00000393454 SLAIN2Q9P270 581 aa11.26□□□□□ -0.61
TDP1-203ENST00000393454 ERICH6BQ5W0A0 696 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 BRINP3Q76B58 766 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 IP6K1Q92551 441 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 EYA1Q99502 592 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 NFAT5O94916 1531 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 ARHGEF10O15013 1369 aa11.25□□□□□ -0.61
TDP1-203ENST00000393454 RTL1A6NKG5 1358 aa11.24□□□□□ -0.61
TDP1-203ENST00000393454 RGPD1P0DJD0 1748 aa11.24□□□□□ -0.61
TDP1-203ENST00000393454 PLIN1O60240 522 aa11.23□□□□□ -0.61
TDP1-203ENST00000393454 ALS2Q96Q42 1657 aa11.23□□□□□ -0.61
TDP1-203ENST00000393454 USP19O94966 1318 aa11.23□□□□□ -0.61
TDP1-203ENST00000393454 LMOD3Q0VAK6 560 aa11.23□□□□□ -0.61
TDP1-203ENST00000393454 LAS1LQ9Y4W2 734 aaKnown RBP11.23□□□□□ -0.61
TDP1-203ENST00000393454 SLIT3O75094 1523 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 IL16Q14005 1332 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 ZC3H6P61129 1189 aaKnown RBP11.22□□□□□ -0.61
TDP1-203ENST00000393454 ARHGEF25Q86VW2 580 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 TSR2Q969E8 191 aaKnown RBP11.22□□□□□ -0.61
TDP1-203ENST00000393454 PPP4R2Q9NY27 417 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 IGSF1Q8N6C5 1336 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 DLG5Q8TDM6 1919 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 TNS3Q68CZ2 1445 aa11.22□□□□□ -0.61
TDP1-203ENST00000393454 CALD1Q05682 793 aaKnown RBP11.21□□□□□ -0.61
TDP1-203ENST00000393454 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.21□□□□□ -0.61
TDP1-203ENST00000393454 CABLES1Q8TDN4 633 aa11.21□□□□□ -0.61
TDP1-203ENST00000393454 THUMPD2Q9BTF0 503 aaKnown RBP11.21□□□□□ -0.61
TDP1-203ENST00000393454 PXDNQ92626 1479 aa11.21□□□□□ -0.61
TDP1-203ENST00000393454 SPATA31A3Q5VYP0 1347 aa11.21□□□□□ -0.61
TDP1-203ENST00000393454 FANCIQ9NVI1 1328 aa11.21□□□□□ -0.61
TDP1-203ENST00000393454 USHBP1Q8N6Y0 703 aa11.21□□□□□ -0.62
TDP1-203ENST00000393454 MED1Q15648 1581 aaPredicted RBP11.2□□□□□ -0.62
TDP1-203ENST00000393454 FAM83GA6ND36 823 aa11.2□□□□□ -0.62
TDP1-203ENST00000393454 BCAR3O75815 825 aa11.2□□□□□ -0.62
TDP1-203ENST00000393454 EXOSC9Q06265 439 aaKnown RBP11.2□□□□□ -0.62
TDP1-203ENST00000393454 DCTN1Q14203 1278 aa11.2□□□□□ -0.62
TDP1-203ENST00000393454 KDRP35968 1356 aa11.19□□□□□ -0.62
TDP1-203ENST00000393454 MTHFSDQ2M296 383 aaKnown RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 NBPF6Q5VWK0 638 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 ANKRD24Q8TF21 1146 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 NBPF4Q96M43 638 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 PHRF1Q9P1Y6 1649 aaKnown RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 CANXP27824 592 aaKnown RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 HAP1P54257 671 aaPredicted RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 GNAI1P63096 354 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 GAS2L2Q8NHY3 880 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 EXOC6Q8TAG9 804 aa11.18□□□□□ -0.62
TDP1-203ENST00000393454 LRRC59Q96AG4 307 aaKnown RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 SOS2Q07890 1332 aaPredicted RBP11.18□□□□□ -0.62
TDP1-203ENST00000393454 RARSP54136 660 aaKnown RBP11.17□□□□□ -0.62
TDP1-203ENST00000393454 B4GALNT3Q6L9W6 998 aa11.17□□□□□ -0.62
TDP1-203ENST00000393454 MCM10Q7L590 875 aa11.17□□□□□ -0.62
TDP1-203ENST00000393454 PELP1Q8IZL8 1130 aaKnown RBP11.17□□□□□ -0.62
TDP1-203ENST00000393454 RTF1Q92541 710 aaKnown RBP11.17□□□□□ -0.62
TDP1-203ENST00000393454 IFT57Q9NWB7 429 aa11.17□□□□□ -0.62
TDP1-203ENST00000393454 AXIN2Q9Y2T1 843 aa11.17□□□□□ -0.62
TDP1-203ENST00000393454 RGPD2P0DJD1 1756 aa11.17□□□□□ -0.62
TDP1-203ENST00000393454 C20orf194Q5TEA3 1177 aa11.16□□□□□ -0.62
TDP1-203ENST00000393454 RGPD5Q99666 1765 aa11.16□□□□□ -0.62
TDP1-203ENST00000393454 CT47B1P0C2W7 299 aaPredicted RBP11.16□□□□□ -0.62
TDP1-203ENST00000393454 CHRNA2Q15822 529 aa11.16□□□□□ -0.62
TDP1-203ENST00000393454 FRAT1Q92837 279 aaPredicted RBP11.16□□□□□ -0.62
TDP1-203ENST00000393454 CRBNQ96SW2 442 aa11.16□□□□□ -0.62
TDP1-203ENST00000393454 CFAP44Q96MT7 982 aa11.15□□□□□ -0.62
TDP1-203ENST00000393454 BCL2L13Q9BXK5 485 aa11.15□□□□□ -0.62
TDP1-203ENST00000393454 CSB-PGBD3P0DP91 1061 aa11.15□□□□□ -0.63
TDP1-203ENST00000393454 CCDC136Q96JN2 1154 aa11.15□□□□□ -0.63
TDP1-203ENST00000393454 MBIPQ9NS73 344 aa11.15□□□□□ -0.63
TDP1-203ENST00000393454 GNAT3A8MTJ3 354 aa11.14□□□□□ -0.63
TDP1-203ENST00000393454 ZNF853P0CG23 659 aa11.14□□□□□ -0.63
TDP1-203ENST00000393454 KIAA0232Q92628 1395 aa11.14□□□□□ -0.63
TDP1-203ENST00000393454 LTBP4Q8N2S1 1624 aa11.14□□□□□ -0.63
TDP1-203ENST00000393454 SMC4Q9NTJ3 1288 aa11.13□□□□□ -0.63
TDP1-203ENST00000393454 NLRP2Q9NX02 1062 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms