RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 RTL5Q5HYW3 569 aaPredicted RBP28.97■■■□□ 2.23
LDB1-201ENST00000361198 XRN1Q8IZH2 1706 aaKnown RBP28.97■■■□□ 2.23
LDB1-201ENST00000361198 DDRGK1Q96HY6 314 aa28.96■■■□□ 2.23
LDB1-201ENST00000361198 AAMPQ13685 434 aa28.96■■■□□ 2.23
LDB1-201ENST00000361198 RGPD8O14715 1765 aaPredicted RBP28.96■■■□□ 2.23
LDB1-201ENST00000361198 THUMPD2Q9BTF0 503 aaKnown RBP28.95■■■□□ 2.23
LDB1-201ENST00000361198 KCNA6P17658 529 aa28.95■■■□□ 2.22
LDB1-201ENST00000361198 RGS3P49796 1198 aa28.95■■■□□ 2.22
LDB1-201ENST00000361198 RIMS1Q86UR5 1692 aaKnown RBP28.94■■■□□ 2.22
LDB1-201ENST00000361198 DZIP1LQ8IYY4 767 aaKnown RBP28.94■■■□□ 2.22
LDB1-201ENST00000361198 LAS1LQ9Y4W2 734 aaKnown RBP28.94■■■□□ 2.22
LDB1-201ENST00000361198 NALCNQ8IZF0 1738 aa28.93■■■□□ 2.22
LDB1-201ENST00000361198 MVPQ14764 893 aaKnown RBP28.93■■■□□ 2.22
LDB1-201ENST00000361198 FAM161AQ3B820 660 aa28.93■■■□□ 2.22
LDB1-201ENST00000361198 PCDHB15Q9Y5E8 787 aa28.93■■■□□ 2.22
LDB1-201ENST00000361198 EIF4A2Q14240 407 aaKnown RBP28.92■■■□□ 2.22
LDB1-201ENST00000361198 FTSJ3Q8IY81 847 aaKnown RBP28.92■■■□□ 2.22
LDB1-201ENST00000361198 USP31Q70CQ4 1352 aa28.92■■■□□ 2.22
LDB1-201ENST00000361198 TRIM27P14373 513 aa28.91■■■□□ 2.22
LDB1-201ENST00000361198 DLG5Q8TDM6 1919 aa28.91■■■□□ 2.22
LDB1-201ENST00000361198 C8orf34Q49A92 452 aa28.91■■■□□ 2.22
LDB1-201ENST00000361198 NGDNQ8NEJ9 315 aaKnown RBP28.9■■■□□ 2.22
LDB1-201ENST00000361198 USP35Q9P2H5 1018 aa28.9■■■□□ 2.22
LDB1-201ENST00000361198 TTC21AQ8NDW8 1320 aa28.9■■■□□ 2.22
LDB1-201ENST00000361198 NOB1Q9ULX3 412 aaKnown RBP28.89■■■□□ 2.22
LDB1-201ENST00000361198 SOX12O15370 315 aa28.89■■■□□ 2.21
LDB1-201ENST00000361198 CALD1Q05682 793 aaKnown RBP28.89■■■□□ 2.21
LDB1-201ENST00000361198 ATF7IPQ6VMQ6 1270 aa28.89■■■□□ 2.21
LDB1-201ENST00000361198 PIK3R4Q99570 1358 aa28.88■■■□□ 2.21
LDB1-201ENST00000361198 PEAK1Q9H792 1746 aa28.88■■■□□ 2.21
LDB1-201ENST00000361198 HSP90AB2PQ58FF8 381 aa28.88■■■□□ 2.21
LDB1-201ENST00000361198 AEBP1Q8IUX7 1158 aa28.88■■■□□ 2.21
LDB1-201ENST00000361198 SULT6B1Q6IMI4 303 aa28.86■■■□□ 2.21
LDB1-201ENST00000361198 ALDH1L2Q3SY69 923 aa28.86■■■□□ 2.21
LDB1-201ENST00000361198 IFT57Q9NWB7 429 aa28.86■■■□□ 2.21
LDB1-201ENST00000361198 ZNF853P0CG23 659 aa28.85■■■□□ 2.21
LDB1-201ENST00000361198 GNAI1P63096 354 aa28.85■■■□□ 2.21
LDB1-201ENST00000361198 FAM83GA6ND36 823 aa28.84■■■□□ 2.21
LDB1-201ENST00000361198 LMOD3Q0VAK6 560 aa28.84■■■□□ 2.21
LDB1-201ENST00000361198 KIF16BQ96L93 1317 aa28.84■■■□□ 2.21
LDB1-201ENST00000361198 MBIPQ9NS73 344 aa28.83■■■□□ 2.21
LDB1-201ENST00000361198 ANKLE2Q86XL3 938 aa28.82■■■□□ 2.2
LDB1-201ENST00000361198 ANKARQ7Z5J8 1434 aa28.82■■■□□ 2.2
LDB1-201ENST00000361198 MAP3K19Q56UN5 1328 aa28.81■■■□□ 2.2
LDB1-201ENST00000361198 VAMP4O75379 141 aa28.81■■■□□ 2.2
LDB1-201ENST00000361198 ZNF428Q96B54 188 aa28.81■■■□□ 2.2
LDB1-201ENST00000361198 DCTN1Q14203 1278 aa28.81■■■□□ 2.2
LDB1-201ENST00000361198 TSPYL6Q8N831 410 aa28.81■■■□□ 2.2
LDB1-201ENST00000361198 ITPRIPQ8IWB1 547 aa28.8■■■□□ 2.2
LDB1-201ENST00000361198 CFAP44Q96MT7 982 aa28.8■■■□□ 2.2
LDB1-201ENST00000361198 IPO8O15397 1037 aaKnown RBP28.8■■■□□ 2.2
LDB1-201ENST00000361198 DDX19BQ9UMR2 479 aa28.79■■■□□ 2.2
LDB1-201ENST00000361198 FMN2Q9NZ56 1722 aa28.79■■■□□ 2.2
LDB1-201ENST00000361198 PIK3C2AO00443 1686 aa28.79■■■□□ 2.2
LDB1-201ENST00000361198 RGPD1P0DJD0 1748 aa28.79■■■□□ 2.2
LDB1-201ENST00000361198 TMEM57Q8N5G2 664 aa28.78■■■□□ 2.2
LDB1-201ENST00000361198 RWDD1Q9H446 243 aaPredicted RBP28.78■■■□□ 2.2
LDB1-201ENST00000361198 ZNF142P52746 1687 aaPredicted RBP28.77■■■□□ 2.2
LDB1-201ENST00000361198 BRPF1P55201 1214 aaPredicted RBP28.77■■■□□ 2.2
LDB1-201ENST00000361198 CHD2O14647 1828 aaKnown RBP28.77■■■□□ 2.2
LDB1-201ENST00000361198 ELL2O00472 640 aaPredicted RBP28.76■■■□□ 2.19
LDB1-201ENST00000361198 ADAMTSL3P82987 1691 aa28.76■■■□□ 2.19
LDB1-201ENST00000361198 SBNO1A3KN83 1393 aa28.74■■■□□ 2.19
LDB1-201ENST00000361198 FLT4P35916 1363 aa28.74■■■□□ 2.19
LDB1-201ENST00000361198 SETD1BQ9UPS6 1966 aaKnown RBP28.74■■■□□ 2.19
LDB1-201ENST00000361198 NLRP6P59044 892 aa28.74■■■□□ 2.19
LDB1-201ENST00000361198 MRPL50Q8N5N7 158 aaKnown RBP28.73■■■□□ 2.19
LDB1-201ENST00000361198 TWISTNBQ3B726 338 aaPredicted RBP28.72■■■□□ 2.19
LDB1-201ENST00000361198 C8orf58Q8NAV2 365 aa28.72■■■□□ 2.19
LDB1-201ENST00000361198 RBM33Q96EV2 1170 aaKnown RBP28.72■■■□□ 2.19
LDB1-201ENST00000361198 PDZRN3Q9UPQ7 1066 aa28.72■■■□□ 2.19
LDB1-201ENST00000361198 AMPHP49418 695 aa28.71■■■□□ 2.19
LDB1-201ENST00000361198 NUTM2GQ5VZR2 741 aa28.71■■■□□ 2.19
LDB1-201ENST00000361198 ARHGEF10O15013 1369 aa28.7■■■□□ 2.19
LDB1-201ENST00000361198 ZBTB40Q9NUA8 1239 aa28.7■■■□□ 2.18
LDB1-201ENST00000361198 VIRMAQ69YN4 1812 aaKnown RBP28.69■■■□□ 2.18
LDB1-201ENST00000361198 MCM10Q7L590 875 aa28.68■■■□□ 2.18
LDB1-201ENST00000361198 MARF1Q9Y4F3 1742 aaKnown RBP28.67■■■□□ 2.18
LDB1-201ENST00000361198 HDAC1Q13547 482 aaPredicted RBP28.67■■■□□ 2.18
LDB1-201ENST00000361198 ABTB2Q8N961 1025 aa28.67■■■□□ 2.18
LDB1-201ENST00000361198 ARHGAP45Q92619 1136 aa28.67■■■□□ 2.18
LDB1-201ENST00000361198 EYA1Q99502 592 aa28.65■■■□□ 2.18
LDB1-201ENST00000361198 PHF8Q9UPP1 1060 aa28.65■■■□□ 2.18
LDB1-201ENST00000361198 KDRP35968 1356 aa28.64■■■□□ 2.18
LDB1-201ENST00000361198 DAXXQ9UER7 740 aaPredicted RBP28.64■■■□□ 2.18
LDB1-201ENST00000361198 CHL1O00533 1208 aa28.63■■■□□ 2.17
LDB1-201ENST00000361198 IGSF1Q8N6C5 1336 aa28.63■■■□□ 2.17
LDB1-201ENST00000361198 SLC4A3P48751 1232 aa28.62■■■□□ 2.17
LDB1-201ENST00000361198 FOXO3O43524 673 aa28.62■■■□□ 2.17
LDB1-201ENST00000361198 MTHFSDQ2M296 383 aaKnown RBP28.62■■■□□ 2.17
LDB1-201ENST00000361198 USP54Q70EL1 1684 aa28.61■■■□□ 2.17
LDB1-201ENST00000361198 HOXC9P31274 260 aa28.61■■■□□ 2.17
LDB1-201ENST00000361198 KRT24Q2M2I5 525 aa28.6■■■□□ 2.17
LDB1-201ENST00000361198 C14orf37Q86TY3 774 aa28.59■■■□□ 2.17
LDB1-201ENST00000361198 USP19O94966 1318 aa28.59■■■□□ 2.17
LDB1-201ENST00000361198 ADGRL3Q9HAR2 1447 aa28.59■■■□□ 2.17
LDB1-201ENST00000361198 NPHP4O75161 1426 aaPredicted RBP28.59■■■□□ 2.17
LDB1-201ENST00000361198 ZBTB7BO15156 539 aaPredicted RBP28.58■■■□□ 2.17
LDB1-201ENST00000361198 CRB1P82279 1406 aa28.58■■■□□ 2.17
LDB1-201ENST00000361198 KIF24Q5T7B8 1368 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms