RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 MYH16Q9H6N6 1097 aa20.96■□□□□ 0.95
LITAF-201ENST00000339430 TSR2Q969E8 191 aaKnown RBP20.96■□□□□ 0.95
LITAF-201ENST00000339430 FBLN1P23142 703 aa20.95■□□□□ 0.94
LITAF-201ENST00000339430 RTL5Q5HYW3 569 aaPredicted RBP20.95■□□□□ 0.94
LITAF-201ENST00000339430 LRRC7Q96NW7 1537 aa20.95■□□□□ 0.94
LITAF-201ENST00000339430 COL3A1P02461 1466 aaPredicted RBP20.94■□□□□ 0.94
LITAF-201ENST00000339430 DDRGK1Q96HY6 314 aa20.94■□□□□ 0.94
LITAF-201ENST00000339430 XIRP1Q702N8 1843 aaKnown RBP20.94■□□□□ 0.94
LITAF-201ENST00000339430 PLEKHF1Q96S99 279 aa20.94■□□□□ 0.94
LITAF-201ENST00000339430 C1orf167Q5SNV9 1468 aa20.93■□□□□ 0.94
LITAF-201ENST00000339430 MSH6P52701 1360 aa20.93■□□□□ 0.94
LITAF-201ENST00000339430 SLC4A3P48751 1232 aa20.93■□□□□ 0.94
LITAF-201ENST00000339430 DCCP43146 1447 aa20.93■□□□□ 0.94
LITAF-201ENST00000339430 TTC21AQ8NDW8 1320 aa20.93■□□□□ 0.94
LITAF-201ENST00000339430 TMPOP42166 694 aaKnown RBP20.93■□□□□ 0.94
LITAF-201ENST00000339430 MAPK8IP3Q9UPT6 1336 aa20.92■□□□□ 0.94
LITAF-201ENST00000339430 CADPS2Q86UW7 1296 aa20.92■□□□□ 0.94
LITAF-201ENST00000339430 PSME1Q06323 249 aa20.91■□□□□ 0.94
LITAF-201ENST00000339430 MST1RQ04912 1400 aa20.91■□□□□ 0.94
LITAF-201ENST00000339430 FOXO3O43524 673 aa20.9■□□□□ 0.94
LITAF-201ENST00000339430 TRIM35Q9UPQ4 493 aa20.9■□□□□ 0.94
LITAF-201ENST00000339430 PCDHB15Q9Y5E8 787 aa20.9■□□□□ 0.94
LITAF-201ENST00000339430 PPM1GO15355 546 aaPredicted RBP20.89■□□□□ 0.94
LITAF-201ENST00000339430 DIAPH1O60610 1272 aaKnown RBP20.89■□□□□ 0.93
LITAF-201ENST00000339430 EXOSC9Q06265 439 aaKnown RBP20.89■□□□□ 0.93
LITAF-201ENST00000339430 POLKQ9UBT6 870 aa20.89■□□□□ 0.93
LITAF-201ENST00000339430 OVOS2A0A0J9YW53 1432 aa20.88■□□□□ 0.93
LITAF-201ENST00000339430 OVOS2Q6IE36 1432 aa20.88■□□□□ 0.93
LITAF-201ENST00000339430 XPCQ01831 940 aaPredicted RBP20.88■□□□□ 0.93
LITAF-201ENST00000339430 NCBP3Q53F19 620 aaKnown RBP20.87■□□□□ 0.93
LITAF-201ENST00000339430 NUTM2GQ5VZR2 741 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 BCL11AQ9H165 835 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 PIK3C2AO00443 1686 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 MAP2P11137 1827 aaKnown RBP20.87■□□□□ 0.93
LITAF-201ENST00000339430 NEFMP07197 916 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 RIPK4P57078 832 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 ABTB2Q8N961 1025 aa20.87■□□□□ 0.93
LITAF-201ENST00000339430 EMILIN1Q9Y6C2 1016 aa20.86■□□□□ 0.93
LITAF-201ENST00000339430 VIRMAQ69YN4 1812 aaKnown RBP20.86■□□□□ 0.93
LITAF-201ENST00000339430 NLRP6P59044 892 aa20.86■□□□□ 0.93
LITAF-201ENST00000339430 RRS1Q15050 365 aaKnown RBP20.86■□□□□ 0.93
LITAF-201ENST00000339430 AATKQ6ZMQ8 1374 aa20.85■□□□□ 0.93
LITAF-201ENST00000339430 SOX12O15370 315 aa20.85■□□□□ 0.93
LITAF-201ENST00000339430 SMC4Q9NTJ3 1288 aa20.85■□□□□ 0.93
LITAF-201ENST00000339430 ZKSCAN2Q63HK3 967 aa20.85■□□□□ 0.93
LITAF-201ENST00000339430 FTSJ3Q8IY81 847 aaKnown RBP20.85■□□□□ 0.93
LITAF-201ENST00000339430 DAXXQ9UER7 740 aaPredicted RBP20.84■□□□□ 0.93
LITAF-201ENST00000339430 USP31Q70CQ4 1352 aa20.84■□□□□ 0.93
LITAF-201ENST00000339430 KIF1AQ12756 1690 aa20.84■□□□□ 0.93
LITAF-201ENST00000339430 MVPQ14764 893 aaKnown RBP20.82■□□□□ 0.92
LITAF-201ENST00000339430 DZIP1LQ8IYY4 767 aaKnown RBP20.82■□□□□ 0.92
LITAF-201ENST00000339430 SSH1Q8WYL5 1049 aa20.82■□□□□ 0.92
LITAF-201ENST00000339430 PNPLA6Q8IY17 1366 aa20.82■□□□□ 0.92
LITAF-201ENST00000339430 KRT28Q7Z3Y7 464 aa20.81■□□□□ 0.92
LITAF-201ENST00000339430 DDX17Q92841 729 aaKnown RBP20.81■□□□□ 0.92
LITAF-201ENST00000339430 SEC24BO95487 1268 aa20.8■□□□□ 0.92
LITAF-201ENST00000339430 AAMPQ13685 434 aa20.8■□□□□ 0.92
LITAF-201ENST00000339430 SLAIN2Q9P270 581 aa20.8■□□□□ 0.92
LITAF-201ENST00000339430 PDZRN3Q9UPQ7 1066 aa20.8■□□□□ 0.92
LITAF-201ENST00000339430 PRKAR2BP31323 418 aa20.79■□□□□ 0.92
LITAF-201ENST00000339430 HMOX1P09601 288 aa20.79■□□□□ 0.92
LITAF-201ENST00000339430 CT47B1P0C2W7 299 aaPredicted RBP20.79■□□□□ 0.92
LITAF-201ENST00000339430 TRIM27P14373 513 aa20.79■□□□□ 0.92
LITAF-201ENST00000339430 LMOD2Q6P5Q4 547 aa20.78■□□□□ 0.92
LITAF-201ENST00000339430 MARF1Q9Y4F3 1742 aaKnown RBP20.78■□□□□ 0.92
LITAF-201ENST00000339430 PNNQ9H307 717 aaKnown RBP20.78■□□□□ 0.92
LITAF-201ENST00000339430 RWDD1Q9H446 243 aaPredicted RBP20.78■□□□□ 0.92
LITAF-201ENST00000339430 CDK12Q9NYV4 1490 aaPredicted RBP20.78■□□□□ 0.92
LITAF-201ENST00000339430 NOB1Q9ULX3 412 aaKnown RBP20.77■□□□□ 0.92
LITAF-201ENST00000339430 BRINP3Q76B58 766 aa20.77■□□□□ 0.91
LITAF-201ENST00000339430 RSPH6AQ9H0K4 717 aa20.77■□□□□ 0.91
LITAF-201ENST00000339430 IL16Q14005 1332 aa20.76■□□□□ 0.91
LITAF-201ENST00000339430 FCHSD2O94868 740 aa20.76■□□□□ 0.91
LITAF-201ENST00000339430 ITPRIPQ8IWB1 547 aa20.76■□□□□ 0.91
LITAF-201ENST00000339430 TRPM3Q9HCF6 1732 aaPredicted RBP20.76■□□□□ 0.91
LITAF-201ENST00000339430 USP19O94966 1318 aa20.76■□□□□ 0.91
LITAF-201ENST00000339430 NPHP3Q7Z494 1330 aa20.75■□□□□ 0.91
LITAF-201ENST00000339430 USP54Q70EL1 1684 aa20.75■□□□□ 0.91
LITAF-201ENST00000339430 MAP3K19Q56UN5 1328 aa20.75■□□□□ 0.91
LITAF-201ENST00000339430 PLEKHG5O94827 1062 aa20.74■□□□□ 0.91
LITAF-201ENST00000339430 ATF7IPQ6VMQ6 1270 aa20.74■□□□□ 0.91
LITAF-201ENST00000339430 PHACTR3Q96KR7 559 aa20.74■□□□□ 0.91
LITAF-201ENST00000339430 AEBP2Q6ZN18 517 aaPredicted RBP20.73■□□□□ 0.91
LITAF-201ENST00000339430 LTBP4Q8N2S1 1624 aa20.73■□□□□ 0.91
LITAF-201ENST00000339430 THUMPD2Q9BTF0 503 aaKnown RBP20.73■□□□□ 0.91
LITAF-201ENST00000339430 PEAK1Q9H792 1746 aa20.72■□□□□ 0.91
LITAF-201ENST00000339430 USP35Q9P2H5 1018 aa20.72■□□□□ 0.91
LITAF-201ENST00000339430 IL13P35225 146 aa20.72■□□□□ 0.91
LITAF-201ENST00000339430 HSP90AB2PQ58FF8 381 aa20.72■□□□□ 0.91
LITAF-201ENST00000339430 TMEM57Q8N5G2 664 aa20.72■□□□□ 0.91
LITAF-201ENST00000339430 AMPHP49418 695 aa20.7■□□□□ 0.9
LITAF-201ENST00000339430 DDX19BQ9UMR2 479 aa20.7■□□□□ 0.9
LITAF-201ENST00000339430 PXDNQ92626 1479 aa20.69■□□□□ 0.9
LITAF-201ENST00000339430 NFKBIBQ15653 356 aa20.69■□□□□ 0.9
LITAF-201ENST00000339430 SBNO1A3KN83 1393 aa20.69■□□□□ 0.9
LITAF-201ENST00000339430 NFE2L2Q16236 605 aa20.68■□□□□ 0.9
LITAF-201ENST00000339430 EIF4A2Q14240 407 aaKnown RBP20.68■□□□□ 0.9
LITAF-201ENST00000339430 KCNH5Q8NCM2 988 aa20.68■□□□□ 0.9
LITAF-201ENST00000339430 FLT4P35916 1363 aa20.68■□□□□ 0.9
LITAF-201ENST00000339430 ALS2Q96Q42 1657 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms