RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 CDK12Q9NYV4 1490 aaPredicted RBP13.03□□□□□ -0.32
SKA1-201ENST00000285116 DDIT3P35638 169 aa13.03□□□□□ -0.32
SKA1-201ENST00000285116 ARXQ96QS3 562 aa13.03□□□□□ -0.32
SKA1-201ENST00000285116 CHMP5Q9NZZ3 219 aa13.03□□□□□ -0.32
SKA1-201ENST00000285116 DIAPH1O60610 1272 aaKnown RBP13.02□□□□□ -0.32
SKA1-201ENST00000285116 TSR2Q969E8 191 aaKnown RBP13.02□□□□□ -0.32
SKA1-201ENST00000285116 TRAK2O60296 914 aa13.02□□□□□ -0.33
SKA1-201ENST00000285116 KIF24Q5T7B8 1368 aa13.02□□□□□ -0.33
SKA1-201ENST00000285116 SPATA31D1Q6ZQQ2 1576 aa13.02□□□□□ -0.33
SKA1-201ENST00000285116 AKAP12Q02952 1782 aa13.02□□□□□ -0.33
SKA1-201ENST00000285116 NRKQ7Z2Y5 1582 aa13.01□□□□□ -0.33
SKA1-201ENST00000285116 DLG5Q8TDM6 1919 aa13.01□□□□□ -0.33
SKA1-201ENST00000285116 GZF1Q9H116 711 aaPredicted RBP13.01□□□□□ -0.33
SKA1-201ENST00000285116 NOB1Q9ULX3 412 aaKnown RBP13.01□□□□□ -0.33
SKA1-201ENST00000285116 HDGFL2Q7Z4V5 671 aaPredicted RBP13.01□□□□□ -0.33
SKA1-201ENST00000285116 CALD1Q05682 793 aaKnown RBP13□□□□□ -0.33
SKA1-201ENST00000285116 ZNF692Q9BU19 519 aaPredicted RBP13□□□□□ -0.33
SKA1-201ENST00000285116 AATKQ6ZMQ8 1374 aa13□□□□□ -0.33
SKA1-201ENST00000285116 RIPK4P57078 832 aa13□□□□□ -0.33
SKA1-201ENST00000285116 TMEM57Q8N5G2 664 aa13□□□□□ -0.33
SKA1-201ENST00000285116 CIZ1Q9ULV3 898 aaPredicted RBP13□□□□□ -0.33
SKA1-201ENST00000285116 CPSF1Q10570 1443 aaKnown RBP13□□□□□ -0.33
SKA1-201ENST00000285116 SRPK2P78362 688 aaKnown RBP12.99□□□□□ -0.33
SKA1-201ENST00000285116 ITPRIPQ8IWB1 547 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 PPP6R1Q9UPN7 881 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 DDX11L8A8MPP1 907 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 ESPNB1AK53 854 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 BMP2KLQ5H9B9 411 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 GGNBP2Q9H3C7 697 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 GRPEL1Q9HAV7 217 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 GCC1Q96CN9 775 aa12.99□□□□□ -0.33
SKA1-201ENST00000285116 EDC4Q6P2E9 1401 aaKnown RBP12.98□□□□□ -0.33
SKA1-201ENST00000285116 C3P01024 1663 aa12.98□□□□□ -0.33
SKA1-201ENST00000285116 NRXN3Q9Y4C0 1643 aa12.98□□□□□ -0.33
SKA1-201ENST00000285116 U2SURPO15042 1029 aaKnown RBP12.98□□□□□ -0.33
SKA1-201ENST00000285116 PRAM1Q96QH2 718 aa12.98□□□□□ -0.33
SKA1-201ENST00000285116 ZNF853P0CG23 659 aa12.97□□□□□ -0.33
SKA1-201ENST00000285116 ITSN1Q15811 1721 aa12.97□□□□□ -0.33
SKA1-201ENST00000285116 ABCC4O15439 1325 aa12.97□□□□□ -0.33
SKA1-201ENST00000285116 CHD1LQ86WJ1 897 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 SLC26A8Q96RN1 970 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 IFT57Q9NWB7 429 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 PTMSP20962 102 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 NFE2L2Q16236 605 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 HSCBQ8IWL3 235 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
SKA1-201ENST00000285116 A2ML1A8K2U0 1454 aa12.96□□□□□ -0.34
SKA1-201ENST00000285116 DIP2BQ9P265 1576 aa12.96□□□□□ -0.34
SKA1-201ENST00000285116 TPM2P07951 284 aa12.95□□□□□ -0.34
SKA1-201ENST00000285116 ZBTB7BO15156 539 aaPredicted RBP12.95□□□□□ -0.34
SKA1-201ENST00000285116 CDK19Q9BWU1 502 aa12.95□□□□□ -0.34
SKA1-201ENST00000285116 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
SKA1-201ENST00000285116 TRIM44Q96DX7 344 aaPredicted RBP12.95□□□□□ -0.34
SKA1-201ENST00000285116 CPS1P31327 1500 aa12.94□□□□□ -0.34
SKA1-201ENST00000285116 MFAP1P55081 439 aaKnown RBP12.94□□□□□ -0.34
SKA1-201ENST00000285116 CFAP44Q96MT7 982 aa12.94□□□□□ -0.34
SKA1-201ENST00000285116 TECPR2O15040 1411 aa12.94□□□□□ -0.34
SKA1-201ENST00000285116 GNAI1P63096 354 aa12.94□□□□□ -0.34
SKA1-201ENST00000285116 POLKQ9UBT6 870 aa12.94□□□□□ -0.34
SKA1-201ENST00000285116 MINK1Q8N4C8 1332 aaPredicted RBP12.94□□□□□ -0.34
SKA1-201ENST00000285116 VAMP4O75379 141 aa12.93□□□□□ -0.34
SKA1-201ENST00000285116 HSPA2P54652 639 aa12.93□□□□□ -0.34
SKA1-201ENST00000285116 NALCNQ8IZF0 1738 aa12.93□□□□□ -0.34
SKA1-201ENST00000285116 LMOD3Q0VAK6 560 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 SIRT1Q96EB6 747 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 ERBB4Q15303 1308 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 TOPAZ1Q8N9V7 1692 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 CLEC17AQ6ZS10 378 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 RGPD1P0DJD0 1748 aa12.92□□□□□ -0.34
SKA1-201ENST00000285116 PRKAR2BP31323 418 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 IL13P35225 146 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 SRCAPQ6ZRS2 3230 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 KIF2CQ99661 725 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 PDCL3Q9H2J4 239 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 CABP1Q9NZU7 370 aa12.91□□□□□ -0.34
SKA1-201ENST00000285116 RAB3GAP1Q15042 981 aa12.9□□□□□ -0.34
SKA1-201ENST00000285116 SKOR2Q2VWA4 1001 aaPredicted RBP12.9□□□□□ -0.34
SKA1-201ENST00000285116 TAOK2Q9UL54 1235 aa12.9□□□□□ -0.34
SKA1-201ENST00000285116 RIMS2Q9UQ26 1411 aa12.9□□□□□ -0.34
SKA1-201ENST00000285116 WAPLQ7Z5K2 1190 aa12.89□□□□□ -0.35
SKA1-201ENST00000285116 API5Q9BZZ5 524 aaKnown RBP12.89□□□□□ -0.35
SKA1-201ENST00000285116 NCKAP5LQ9HCH0 1330 aa12.89□□□□□ -0.35
SKA1-201ENST00000285116 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
SKA1-201ENST00000285116 IBTKQ9P2D0 1353 aaPredicted RBP12.88□□□□□ -0.35
SKA1-201ENST00000285116 LNPKQ9C0E8 428 aa12.88□□□□□ -0.35
SKA1-201ENST00000285116 N4BP2Q86UW6 1770 aaPredicted RBP12.88□□□□□ -0.35
SKA1-201ENST00000285116 ZBTB22O15209 634 aa12.87□□□□□ -0.35
SKA1-201ENST00000285116 SIRT2Q8IXJ6 389 aa12.87□□□□□ -0.35
SKA1-201ENST00000285116 HAP1P54257 671 aaPredicted RBP12.86□□□□□ -0.35
SKA1-201ENST00000285116 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
SKA1-201ENST00000285116 MBIPQ9NS73 344 aa12.86□□□□□ -0.35
SKA1-201ENST00000285116 KIAA0232Q92628 1395 aa12.86□□□□□ -0.35
SKA1-201ENST00000285116 TUBGCP6Q96RT7 1819 aa12.86□□□□□ -0.35
SKA1-201ENST00000285116 CCDC173Q0VFZ6 552 aa12.86□□□□□ -0.35
SKA1-201ENST00000285116 TNPO1Q92973 898 aaKnown RBP12.86□□□□□ -0.35
SKA1-201ENST00000285116 RGS12O14924 1447 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 SOX12O15370 315 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 CDC45O75419 566 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 FBLN1P23142 703 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 INTS3Q68E01 1043 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms