RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 MIS18AQ9NYP9 233 aa16.84■□□□□ 0.29
CDH3-201ENST00000264012 NUP153P49790 1475 aaKnown RBP16.84■□□□□ 0.29
CDH3-201ENST00000264012 SRGAP3O43295 1099 aa16.84■□□□□ 0.29
CDH3-201ENST00000264012 RAPGEF6Q8TEU7 1601 aa16.83■□□□□ 0.29
CDH3-201ENST00000264012 ABCC11Q96J66 1382 aa16.83■□□□□ 0.29
CDH3-201ENST00000264012 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.83■□□□□ 0.29
CDH3-201ENST00000264012 AMOTL2Q9Y2J4 779 aa16.83■□□□□ 0.29
CDH3-201ENST00000264012 TSR1Q2NL82 804 aaKnown RBP16.83■□□□□ 0.28
CDH3-201ENST00000264012 FYB1O15117 783 aa16.83■□□□□ 0.28
CDH3-201ENST00000264012 CEBPAP49715 358 aaPredicted RBP16.82■□□□□ 0.28
CDH3-201ENST00000264012 DUSP27Q5VZP5 1158 aa16.82■□□□□ 0.28
CDH3-201ENST00000264012 IFT57Q9NWB7 429 aa16.82■□□□□ 0.28
CDH3-201ENST00000264012 C20orf194Q5TEA3 1177 aa16.82■□□□□ 0.28
CDH3-201ENST00000264012 SASS6Q6UVJ0 657 aa16.82■□□□□ 0.28
CDH3-201ENST00000264012 NOC3LQ8WTT2 800 aaKnown RBP16.82■□□□□ 0.28
CDH3-201ENST00000264012 TPM1P09493 284 aa16.81■□□□□ 0.28
CDH3-201ENST00000264012 CNNM1Q9NRU3 951 aa16.81■□□□□ 0.28
CDH3-201ENST00000264012 HOOK1Q9UJC3 728 aaKnown RBP16.81■□□□□ 0.28
CDH3-201ENST00000264012 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
CDH3-201ENST00000264012 PLCH2O75038 1416 aa16.81■□□□□ 0.28
CDH3-201ENST00000264012 KDM5BQ9UGL1 1544 aa16.8■□□□□ 0.28
CDH3-201ENST00000264012 CCDC158Q5M9N0 1113 aa16.8■□□□□ 0.28
CDH3-201ENST00000264012 TRAK2O60296 914 aa16.8■□□□□ 0.28
CDH3-201ENST00000264012 NKTRP30414 1462 aaKnown RBP16.8■□□□□ 0.28
CDH3-201ENST00000264012 ALDH1L2Q3SY69 923 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 IL1RAPL2Q9NP60 686 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 TPM2P07951 284 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 PDCP20941 246 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 PHF8Q9UPP1 1060 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 MAPKBP1O60336 1514 aa16.79■□□□□ 0.28
CDH3-201ENST00000264012 CCDC47Q96A33 483 aaKnown RBP16.79■□□□□ 0.28
CDH3-201ENST00000264012 MAP4K4O95819 1239 aaPredicted RBP16.78■□□□□ 0.28
CDH3-201ENST00000264012 TTC39AQ5SRH9 613 aa16.78■□□□□ 0.28
CDH3-201ENST00000264012 SART3Q15020 963 aaKnown RBP16.78■□□□□ 0.28
CDH3-201ENST00000264012 AACSQ86V21 672 aa16.78■□□□□ 0.28
CDH3-201ENST00000264012 NSD2O96028 1365 aa16.78■□□□□ 0.28
CDH3-201ENST00000264012 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.27
CDH3-201ENST00000264012 ANKRD20A12PQ8NF67 263 aa16.77■□□□□ 0.27
CDH3-201ENST00000264012 NUTM2BA6NNL0 878 aaPredicted RBP16.77■□□□□ 0.27
CDH3-201ENST00000264012 NUTM2EB1AL46 878 aaPredicted RBP16.77■□□□□ 0.27
CDH3-201ENST00000264012 FOXO3O43524 673 aa16.77■□□□□ 0.27
CDH3-201ENST00000264012 NUTM2AQ8IVF1 878 aaPredicted RBP16.77■□□□□ 0.27
CDH3-201ENST00000264012 EXOC6BQ9Y2D4 811 aa16.77■□□□□ 0.27
CDH3-201ENST00000264012 CYP46A1Q9Y6A2 500 aa16.76■□□□□ 0.27
CDH3-201ENST00000264012 MBD3O95983 291 aa16.76■□□□□ 0.27
CDH3-201ENST00000264012 MRE11P49959 708 aa16.76■□□□□ 0.27
CDH3-201ENST00000264012 CCDC57Q2TAC2 916 aa16.76■□□□□ 0.27
CDH3-201ENST00000264012 USHBP1Q8N6Y0 703 aa16.76■□□□□ 0.27
CDH3-201ENST00000264012 TAF7Q15545 349 aaPredicted RBP16.75■□□□□ 0.27
CDH3-201ENST00000264012 CAVIN1Q6NZI2 390 aaKnown RBP16.75■□□□□ 0.27
CDH3-201ENST00000264012 K7ELQ4 463 aaPredicted RBP16.75■□□□□ 0.27
CDH3-201ENST00000264012 SDF4Q9BRK5 362 aa16.75■□□□□ 0.27
CDH3-201ENST00000264012 PRPF40AO75400 957 aaKnown RBP16.75■□□□□ 0.27
CDH3-201ENST00000264012 CTDP1Q9Y5B0 961 aaPredicted RBP16.75■□□□□ 0.27
CDH3-201ENST00000264012 XBP1P17861 261 aa16.74■□□□□ 0.27
CDH3-201ENST00000264012 RNF214Q8ND24 703 aa16.74■□□□□ 0.27
CDH3-201ENST00000264012 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.74■□□□□ 0.27
CDH3-201ENST00000264012 CEP89Q96ST8 783 aa16.74■□□□□ 0.27
CDH3-201ENST00000264012 ASXL2Q76L83 1435 aa16.74■□□□□ 0.27
CDH3-201ENST00000264012 NASPP49321 788 aaPredicted RBP16.73■□□□□ 0.27
CDH3-201ENST00000264012 CWC22Q9HCG8 908 aaKnown RBP16.73■□□□□ 0.27
CDH3-201ENST00000264012 BRMS1Q9HCU9 246 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 DUOX2Q9NRD8 1548 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 ZNF592Q92610 1267 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 TCEAL9Q9UHQ7 104 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 SYCP2Q9BX26 1530 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 LRPPRCP42704 1394 aaKnown RBP16.73■□□□□ 0.27
CDH3-201ENST00000264012 CEP126Q9P2H0 1117 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 RALGAPBQ86X10 1494 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 KDM4AO75164 1064 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 AMOTQ4VCS5 1084 aa16.73■□□□□ 0.27
CDH3-201ENST00000264012 CCAR2Q8N163 923 aaKnown RBP16.73■□□□□ 0.27
CDH3-201ENST00000264012 PCMTD1Q96MG8 357 aaPredicted RBP16.73■□□□□ 0.27
CDH3-201ENST00000264012 FIBPO43427 364 aa16.72■□□□□ 0.27
CDH3-201ENST00000264012 RRP12Q5JTH9 1297 aaKnown RBP16.72■□□□□ 0.27
CDH3-201ENST00000264012 GNL3LQ9NVN8 582 aaKnown RBP16.72■□□□□ 0.27
CDH3-201ENST00000264012 MTMR7Q9Y216 660 aa16.72■□□□□ 0.27
CDH3-201ENST00000264012 IPO7O95373 1038 aaKnown RBP16.72■□□□□ 0.27
CDH3-201ENST00000264012 MPHOSPH8Q99549 860 aa16.72■□□□□ 0.27
CDH3-201ENST00000264012 PDE4CQ08493 712 aa16.71■□□□□ 0.27
CDH3-201ENST00000264012 CWC27Q6UX04 472 aaKnown RBP16.71■□□□□ 0.27
CDH3-201ENST00000264012 SKAP1Q86WV1 359 aa16.71■□□□□ 0.27
CDH3-201ENST00000264012 TRIM27P14373 513 aa16.71■□□□□ 0.27
CDH3-201ENST00000264012 ANKRD1Q15327 319 aa16.71■□□□□ 0.26
CDH3-201ENST00000264012 GOLGA6L1Q8N7Z2 621 aa16.71■□□□□ 0.26
CDH3-201ENST00000264012 ITSN2Q9NZM3 1697 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 FKBP4Q02790 459 aaKnown RBP eCLIP16.7■□□□□ 0.26
CDH3-201ENST00000264012 NUTM1Q86Y26 1132 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 F6X3S4 739 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 PTCD1O75127 700 aaKnown RBP16.7■□□□□ 0.26
CDH3-201ENST00000264012 ATP2B1P20020 1258 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 A2MP01023 1474 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 ANKRD36BQ8N2N9 1353 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 TTC21BQ7Z4L5 1316 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 KIF1BPQ96EK5 621 aa16.7■□□□□ 0.26
CDH3-201ENST00000264012 TCOF1Q13428 1488 aaKnown RBP16.69■□□□□ 0.26
CDH3-201ENST00000264012 PRAG1Q86YV5 1406 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 TRAPPC8Q9Y2L5 1435 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 ACEP12821 1306 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 STK3Q13188 491 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms