RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CALD1Q05682 793 aaKnown RBP16.63■□□□□ 0.25
SPTLC1-201ENST00000262554 ANP32AP39687 249 aaKnown RBP16.63■□□□□ 0.25
SPTLC1-201ENST00000262554 PHACTR3Q96KR7 559 aa16.63■□□□□ 0.25
SPTLC1-201ENST00000262554 SSH2Q76I76 1423 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 ADAMTSL3P82987 1691 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 DLG5Q8TDM6 1919 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 ZKSCAN2Q63HK3 967 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 BACH2Q9BYV9 841 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 ANKARQ7Z5J8 1434 aa16.62■□□□□ 0.25
SPTLC1-201ENST00000262554 ATXN8OSP0DMR3 200 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 ANP32EQ9BTT0 268 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 SMC4Q9NTJ3 1288 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 USP31Q70CQ4 1352 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 FMN2Q9NZ56 1722 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 KCNA6P17658 529 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 LMOD3Q0VAK6 560 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 ANKLE2Q86XL3 938 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 NGDNQ8NEJ9 315 aaKnown RBP16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 PMFBP1Q8TBY8 1022 aa16.61■□□□□ 0.25
SPTLC1-201ENST00000262554 CHD2O14647 1828 aaKnown RBP16.6■□□□□ 0.25
SPTLC1-201ENST00000262554 RLBP1P12271 317 aa16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 SKAP1Q86WV1 359 aa16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 SETD1BQ9UPS6 1966 aaKnown RBP16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 PEAK1Q9H792 1746 aa16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 ERICH6Q7L0X2 663 aa16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 FTSJ3Q8IY81 847 aaKnown RBP16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 DZIP1LQ8IYY4 767 aaKnown RBP16.59■□□□□ 0.25
SPTLC1-201ENST00000262554 EIF4A2Q14240 407 aaKnown RBP16.58■□□□□ 0.24
SPTLC1-201ENST00000262554 SSH1Q8WYL5 1049 aa16.58■□□□□ 0.24
SPTLC1-201ENST00000262554 TNNQ9UQP3 1299 aa16.58■□□□□ 0.24
SPTLC1-201ENST00000262554 GNAI1P63096 354 aa16.57■□□□□ 0.24
SPTLC1-201ENST00000262554 LAS1LQ9Y4W2 734 aaKnown RBP16.57■□□□□ 0.24
SPTLC1-201ENST00000262554 IGHDP01880 384 aa16.56■□□□□ 0.24
SPTLC1-201ENST00000262554 MVPQ14764 893 aaKnown RBP16.56■□□□□ 0.24
SPTLC1-201ENST00000262554 ALDH1L2Q3SY69 923 aa16.56■□□□□ 0.24
SPTLC1-201ENST00000262554 ZNF428Q96B54 188 aa16.56■□□□□ 0.24
SPTLC1-201ENST00000262554 IFT57Q9NWB7 429 aa16.56■□□□□ 0.24
SPTLC1-201ENST00000262554 KIF16BQ96L93 1317 aa16.55■□□□□ 0.24
SPTLC1-201ENST00000262554 PIK3C2AO00443 1686 aa16.55■□□□□ 0.24
SPTLC1-201ENST00000262554 RGPD1P0DJD0 1748 aa16.55■□□□□ 0.24
SPTLC1-201ENST00000262554 IPO8O15397 1037 aaKnown RBP16.54■□□□□ 0.24
SPTLC1-201ENST00000262554 ATF7IPQ6VMQ6 1270 aa16.54■□□□□ 0.24
SPTLC1-201ENST00000262554 SULT6B1Q6IMI4 303 aa16.54■□□□□ 0.24
SPTLC1-201ENST00000262554 IPO9Q96P70 1041 aaKnown RBP16.54■□□□□ 0.24
SPTLC1-201ENST00000262554 THUMPD2Q9BTF0 503 aaKnown RBP16.54■□□□□ 0.24
SPTLC1-201ENST00000262554 SOX12O15370 315 aa16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 TRIM27P14373 513 aa16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 MYT1Q01538 1121 aa16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 HSP90AB2PQ58FF8 381 aa16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 NOB1Q9ULX3 412 aaKnown RBP16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 SBNO1A3KN83 1393 aa16.53■□□□□ 0.24
SPTLC1-201ENST00000262554 ZNF853P0CG23 659 aa16.52■□□□□ 0.24
SPTLC1-201ENST00000262554 RGS3P49796 1198 aa16.52■□□□□ 0.24
SPTLC1-201ENST00000262554 USP54Q70EL1 1684 aa16.52■□□□□ 0.24
SPTLC1-201ENST00000262554 MAP3K19Q56UN5 1328 aa16.52■□□□□ 0.24
SPTLC1-201ENST00000262554 FLT4P35916 1363 aa16.52■□□□□ 0.24
SPTLC1-201ENST00000262554 AEBP1Q8IUX7 1158 aa16.52■□□□□ 0.23
SPTLC1-201ENST00000262554 CFAP44Q96MT7 982 aa16.52■□□□□ 0.23
SPTLC1-201ENST00000262554 DDX19BQ9UMR2 479 aa16.52■□□□□ 0.23
SPTLC1-201ENST00000262554 BRPF1P55201 1214 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1-201ENST00000262554 FAM161AQ3B820 660 aa16.51■□□□□ 0.23
SPTLC1-201ENST00000262554 RWDD1Q9H446 243 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1-201ENST00000262554 PCDHB15Q9Y5E8 787 aa16.51■□□□□ 0.23
SPTLC1-201ENST00000262554 ARHGEF10O15013 1369 aa16.51■□□□□ 0.23
SPTLC1-201ENST00000262554 NPM2Q86SE8 214 aaKnown RBP16.5■□□□□ 0.23
SPTLC1-201ENST00000262554 MBIPQ9NS73 344 aa16.5■□□□□ 0.23
SPTLC1-201ENST00000262554 NOP58Q9Y2X3 529 aaKnown RBP16.5■□□□□ 0.23
SPTLC1-201ENST00000262554 NLRP6P59044 892 aa16.5■□□□□ 0.23
SPTLC1-201ENST00000262554 MARF1Q9Y4F3 1742 aaKnown RBP16.49■□□□□ 0.23
SPTLC1-201ENST00000262554 VAMP4O75379 141 aa16.49■□□□□ 0.23
SPTLC1-201ENST00000262554 AMPHP49418 695 aa16.49■□□□□ 0.23
SPTLC1-201ENST00000262554 ITPRIPQ8IWB1 547 aa16.49■□□□□ 0.23
SPTLC1-201ENST00000262554 FAM83GA6ND36 823 aa16.48■□□□□ 0.23
SPTLC1-201ENST00000262554 PHF8Q9UPP1 1060 aa16.48■□□□□ 0.23
SPTLC1-201ENST00000262554 NPHP4O75161 1426 aaPredicted RBP16.48■□□□□ 0.23
SPTLC1-201ENST00000262554 VIRMAQ69YN4 1812 aaKnown RBP16.47■□□□□ 0.23
SPTLC1-201ENST00000262554 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
SPTLC1-201ENST00000262554 ADGRL3Q9HAR2 1447 aa16.46■□□□□ 0.23
SPTLC1-201ENST00000262554 C8orf34Q49A92 452 aa16.46■□□□□ 0.23
SPTLC1-201ENST00000262554 TMEM57Q8N5G2 664 aa16.46■□□□□ 0.23
SPTLC1-201ENST00000262554 ABTB2Q8N961 1025 aa16.46■□□□□ 0.23
SPTLC1-201ENST00000262554 ZBTB47Q9UFB7 747 aaPredicted RBP16.46■□□□□ 0.23
SPTLC1-201ENST00000262554 PAK3O75914 559 aaPredicted RBP16.46■□□□□ 0.22
SPTLC1-201ENST00000262554 DCTN1Q14203 1278 aa16.46■□□□□ 0.22
SPTLC1-201ENST00000262554 TWISTNBQ3B726 338 aaPredicted RBP16.46■□□□□ 0.22
SPTLC1-201ENST00000262554 TSPYL6Q8N831 410 aa16.46■□□□□ 0.22
SPTLC1-201ENST00000262554 ARHGAP45Q92619 1136 aa16.46■□□□□ 0.22
SPTLC1-201ENST00000262554 MRPL50Q8N5N7 158 aaKnown RBP16.45■□□□□ 0.22
SPTLC1-201ENST00000262554 U3KPZ7 1027 aaPredicted RBP16.44■□□□□ 0.22
SPTLC1-201ENST00000262554 KDRP35968 1356 aa16.44■□□□□ 0.22
SPTLC1-201ENST00000262554 NUTM2GQ5VZR2 741 aa16.44■□□□□ 0.22
SPTLC1-201ENST00000262554 IGSF1Q8N6C5 1336 aa16.43■□□□□ 0.22
SPTLC1-201ENST00000262554 ELL2O00472 640 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-201ENST00000262554 HAP1P54257 671 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-201ENST00000262554 C8orf58Q8NAV2 365 aa16.43■□□□□ 0.22
SPTLC1-201ENST00000262554 CHMP4BQ9H444 224 aaKnown RBP16.43■□□□□ 0.22
SPTLC1-201ENST00000262554 HDAC1Q13547 482 aaPredicted RBP16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 C14orf37Q86TY3 774 aa16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 EYA1Q99502 592 aa16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 ZBTB40Q9NUA8 1239 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms