RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 AASDHPPTQ9NRN7 309 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 MFHAS1Q9Y4C4 1052 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 DCHS1Q96JQ0 3298 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 hCG_1818297A0A087WSY0 165 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 A0A1B0GVT2 93 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 C10orf142B7Z368 130 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 VILLO15195 856 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 AP1G1O43747 822 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 MAGEC1O60732 1142 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 RNGTTO60942 597 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 ZNF189O75820 626 aaPredicted RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 PCDH8O95206 1070 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ZNF883P0CG24 379 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ADRB3P13945 408 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 TCF4P15884 667 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ZFXP17010 805 aaPredicted RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 CSRP1P21291 193 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 AMPD1P23109 780 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 CD38P28907 300 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 FNTAP49354 379 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 RENBPP51606 427 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 KLF1Q13351 362 aaPredicted RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 HNRNPDQ14103 355 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 CYP1B1Q16678 543 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 PPM1JQ5JR12 505 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 GDPD4Q6W3E5 623 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 MAATS1Q7Z4T9 603 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 LRRC49Q8IUZ0 686 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ARHGAP12Q8IWW6 846 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 BBS5Q8N3I7 341 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 NSMCE1Q8WV22 266 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 FEM1CQ96JP0 617 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 SERAC1Q96JX3 654 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ZNF599Q96NL3 588 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 ORAI3Q9BRQ5 295 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 MAK16Q9BXY0 300 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 CPEB1Q9BZB8 566 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 PDFQ9HBH1 243 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 FSCN3Q9NQT6 498 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 IPO11Q9UI26 975 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 ANKRD6Q9Y2G4 727 aa13.59□□□□□ -0.23
CLK3-218ENST00000566926 TDRD6O60522 2096 aaKnown RBP13.59□□□□□ -0.23
CLK3-218ENST00000566926 UQCRHLA0A096LP55 91 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 C3orf70A6NLC5 250 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 C16orf96A6NNT2 1141 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 PRAMEF26H0Y7S4 382 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 J3KR12 359 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 PHF2O75151 1096 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 UQCRHP07919 91 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 CSNK1DP48730 415 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 SUOXP51687 545 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 ARSEP51690 589 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 TAS2R38P59533 333 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 PPP2CBP62714 309 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 PPP2CAP67775 309 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 NSUN2Q08J23 767 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLK3-218ENST00000566926 OVGP1Q12889 678 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 DHX34Q14147 1143 aaKnown RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 STAT4Q14765 748 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 SUZ12Q15022 739 aaKnown RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 CYTH1Q15438 398 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 ATXN7L2Q5T6C5 722 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 TXNRD3NBQ6F5E7 133 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 NAPEPLDQ6IQ20 393 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 KIAA1161Q6NSJ0 714 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 C8orf74Q6P047 294 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 DRICH1Q6PGQ1 229 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 MFSD7Q6UXD7 560 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 IQCHQ86VS3 1027 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 HORMAD1Q86X24 394 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 MFSD2AQ8NA29 543 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 OR6K2Q8NGY2 324 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 FAM174AQ8TBP5 190 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 HCAR2Q8TDS4 363 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 GRK7Q8WTQ7 553 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 RAPGEF5Q92565 580 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 TSC1Q92574 1164 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 RNF25Q96BH1 459 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 FAF2Q96CS3 445 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 SLC6A18Q96N87 628 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 KLHL32Q96NJ5 620 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 CINPQ9BW66 212 aaPredicted RBP13.58□□□□□ -0.24
CLK3-218ENST00000566926 CALN1Q9BXU9 219 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 GAREM1Q9H706 876 aa13.58□□□□□ -0.24
CLK3-218ENST00000566926 A0A1W2PQU0 124 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 NEMP1O14524 444 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 TSPAN6O43657 245 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 KCNK5O95279 499 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 UGT2B4P06133 528 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 CEACAM1P13688 526 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 KCNA4P22459 653 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 XPAP23025 273 aaPredicted RBP13.57□□□□□ -0.24
CLK3-218ENST00000566926 MAT2AP31153 395 aaKnown RBP13.57□□□□□ -0.24
CLK3-218ENST00000566926 HSPA9P38646 679 aaKnown RBP13.57□□□□□ -0.24
CLK3-218ENST00000566926 RPS21P63220 83 aaKnown RBP13.57□□□□□ -0.24
CLK3-218ENST00000566926 C2orf54Q08AI8 447 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 DPYSL3Q14195 570 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 CCNG2Q16589 344 aa13.57□□□□□ -0.24
CLK3-218ENST00000566926 KIF19Q2TAC6 998 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms