RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BUB1O43683 1085 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 SPOPO43791 374 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ADH1BP00325 375 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 PTMAP06454 111 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 CCDC175P0C221 793 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 GOT1P17174 413 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ITGB6P18564 788 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 CR2P20023 1033 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 C5AR1P21730 350 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 COMTP21964 271 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ARL4AP40617 200 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 SKOR1P84550 965 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 GNA12Q03113 381 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 KRT81Q14533 505 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ELAVL3Q14576 367 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ATP13A4Q4VNC1 1196 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 LRRC38Q5VT99 294 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 RFX8Q6ZV50 586 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 MMAAQ8IVH4 418 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 DCAF4L2Q8NA75 395 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 GANCQ8TET4 914 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 OMDQ99983 421 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 NEUROG2Q9H2A3 272 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 PCDH18Q9HCL0 1135 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 NDFIP2Q9NV92 336 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 DONSONQ9NYP3 566 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 CWC15Q9P013 229 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 RCOR3Q9P2K3 495 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 DNAI1Q9UI46 699 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 SLC25A13Q9UJS0 675 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 VPS28Q9UK41 221 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ALG6Q9Y672 507 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 A0A0D9SEW6 157 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 LRRC72A6NJI9 287 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 WNT9AO14904 365 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 MID1O15344 667 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 DAPK3O43293 454 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 SIGLEC6O43699 453 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 ATP9BO43861 1147 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 OPA1O60313 960 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 RAMP2O60895 175 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 RNASEH2AO75792 299 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 ETFBP38117 255 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 STK19P49842 368 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 ARSEP51690 589 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 NAP1L1P55209 391 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 CDH6P55285 790 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 NXPH1P58417 271 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 ZNF211Q13398 564 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 DPYSQ14117 519 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 PDK2Q15119 407 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 SLC45A4Q5BKX6 768 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 DSG4Q86SJ6 1040 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 DAAM2Q86T65 1068 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 RHOT1Q8IXI2 618 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 STK40Q8N2I9 435 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 OR7D4Q8NG98 312 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 FRS2Q8WU20 508 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 CSPG4P5Q96PW8 444 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 PSMB7Q99436 277 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 SEMA3CQ99985 751 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 C2orf49Q9BVC5 232 aaPredicted RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 TSGA10Q9BZW7 698 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 MAGEH1Q9H213 219 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 GOLPH3Q9H4A6 298 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 TRIM10Q9UDY6 481 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 TPX2Q9ULW0 747 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 HYOU1Q9Y4L1 999 aa12.09□□□□□ -0.47
SQSTM1-206ENST00000466342 A0A1W2PP55 124 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 MACROD2A1Z1Q3 448 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 GRID2IPA4D2P6 1211 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ALOX15BO15296 676 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 PSTPIP1O43586 416 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 KRT86O43790 486 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 CSO75390 466 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 IL1BP01584 269 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 CD48P09326 243 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 SFTPCP11686 197 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ERCC2P18074 760 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 RBMS1P29558 406 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 NUMBP49757 651 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 NDST2P52849 883 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 INHBCP55103 352 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 YBEYP58557 167 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 DAB2P98082 770 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 DPYSL3Q14195 570 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 POLD3Q15054 466 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 DLG2Q15700 870 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 IFI16Q16666 785 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ACCSLQ4AC99 568 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ZFYVE27Q5T4F4 411 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 FAM46CQ5VWP2 391 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 NCEH1Q6PIU2 408 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 MAP7D3Q8IWC1 876 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 UMODL1-AS1Q8N2C9 162 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 SH2D3CQ8N5H7 860 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 KCTD6Q8NC69 237 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 OR2T34Q8NGX1 318 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 OR8D1Q8WZ84 308 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ARHGEF2Q92974 986 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms