RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TRIOO75962 3097 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CCDC163A0A0D9SF12 145 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 TCRBV9S1A1TA0A576 114 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ARHGAP42A6NI28 874 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 HACD1B0YJ81 288 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 DCLK1O15075 740 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ZBTB24O43167 697 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 MFSD11O43934 449 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SPAG7O75391 227 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 METTL18O95568 372 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 TPSB2P20231 275 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 MX2P20592 715 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CSKP41240 450 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 MSH2P43246 934 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 DGKEP52429 567 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ZNF33AQ06730 810 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 ITIH4Q14624 930 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 PAFAH1B3Q15102 231 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 TPSAB1Q15661 275 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 FUT11Q495W5 492 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 INO80DQ53TQ3 878 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 RNF187Q5TA31 235 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 TMEM215Q68D42 235 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 CAND1Q86VP6 1230 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 CIR1Q86X95 450 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 PLPP6Q8IY26 295 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 C4orf33Q8N1A6 199 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 AGGF1Q8N302 714 aaeCLIP10.33□□□□□ -0.76
VPS53-202ENST00000389040 IL17RCQ8NAC3 791 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 MCUQ8NE86 351 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 WFDC5Q8TCV5 224 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 HTR3CQ8WXA8 447 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 FATE1Q969F0 183 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 FAM126AQ9BYI3 521 aaPredicted RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 BRD8Q9H0E9 1235 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 IRF2BPLQ9H1B7 796 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 TMEM245Q9H330 911 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 SLC25A13Q9UJS0 675 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 FBXO4Q9UKT5 387 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 INTS6Q9UL03 887 aaKnown RBP10.33□□□□□ -0.76
VPS53-202ENST00000389040 MMP17Q9ULZ9 603 aa10.33□□□□□ -0.76
VPS53-202ENST00000389040 F5P12259 2224 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 KDELR3O43731 214 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 PDGFBP01127 241 aaPredicted RBP10.32□□□□□ -0.76
VPS53-202ENST00000389040 VAV1P15498 845 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 CXCL12P48061 93 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 IL9RQ01113 521 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 NAIF1Q69YI7 327 aaPredicted RBP10.32□□□□□ -0.76
VPS53-202ENST00000389040 CCDC121Q6ZUS5 278 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 C1orf210Q8IVY1 113 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 CHPFQ8IZ52 775 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 DTWD2Q8NBA8 298 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 DCAKDQ8WVC6 231 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 ISG20Q96AZ6 181 aaKnown RBP10.32□□□□□ -0.76
VPS53-202ENST00000389040 ZNF599Q96NL3 588 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 CEP44Q9C0F1 390 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 ATP13A1Q9HD20 1204 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 SSU72Q9NP77 194 aaKnown RBP10.32□□□□□ -0.76
VPS53-202ENST00000389040 HAUS2Q9NVX0 235 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 ERVW-1Q9UQF0 538 aa10.32□□□□□ -0.76
VPS53-202ENST00000389040 A0A1W2PPM1 405 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TRIM24O15164 1050 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PI15O43692 258 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ATP9BO43861 1147 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TYROBPO43914 113 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PIAS1O75925 651 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ALDH1A2O94788 518 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ASMTLO95671 621 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 DCNP07585 359 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 KRT4P19013 534 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 MZF1P28698 734 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 MAGEA3P43357 314 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 WDR4P57081 412 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 MESP2Q0VG99 397 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SERINC3Q13530 473 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SEMA5AQ13591 1074 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 RFTN1Q14699 578 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 STARD3Q14849 445 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PDK1Q15118 436 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PRKD1Q15139 912 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 ZNF528Q3MIS6 628 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 C2orf27AQ580R0 203 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 IL31Q6EBC2 164 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TMEM105Q8N8V8 129 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 RPLP0P6Q8NHW5 317 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 DENND1AQ8TEH3 1009 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 MZB1Q8WU39 189 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 LRRC39Q96DD0 335 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 CFAP36Q96G28 342 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SPATA13Q96N96 652 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 LGMNQ99538 433 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ELAC2Q9BQ52 826 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 POLMQ9NP87 494 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 FGFR1OP2Q9NVK5 253 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ZC3H7BQ9UGR2 993 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 IKBKGQ9Y6K9 419 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TICRRQ7Z2Z1 1910 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 A0A0D9SEW6 157 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PPP1R12AO14974 1030 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 LAMTOR5O43504 91 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms