RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF366Q8N895 744 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF334Q9HCZ1 680 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-213ENST00000620219 TMEM248Q9NWD8 314 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 SIP14410 1827 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 CD68P34810 354 aaPredicted RBP15.88■□□□□ 0.13
CPSF1-213ENST00000620219 RARS2Q5T160 578 aaKnown RBP15.88■□□□□ 0.13
CPSF1-213ENST00000620219 PTRHD1Q6GMV3 140 aaKnown RBP15.88■□□□□ 0.13
CPSF1-213ENST00000620219 MSANTD2Q6P1R3 559 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 CENPTQ96BT3 561 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 FCRL5Q96RD9 977 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 KCTD3Q9Y597 815 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 RAI2Q9Y5P3 530 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 SHROOM3Q8TF72 1996 aa15.88■□□□□ 0.13
CPSF1-213ENST00000620219 FAM95CA0A1B0GW59 222 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 MYL2P10916 166 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 SLC6A4P31645 630 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 SLC8A1P32418 973 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 MRPL58Q14197 206 aaKnown RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 C1orf74Q96LT6 269 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 NSMCE4AQ9NXX6 385 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 MTO1Q9Y2Z2 717 aaKnown RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 GKP32189 559 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF317Q96PQ6 595 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 HERC2P3Q9BVR0 1158 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 PRKD2Q9BZL6 878 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 KPNA3O00505 521 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF460Q14592 562 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 POTEHQ6S545 545 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 RAB44Q7Z6P3 723 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 OR4K2Q8NGD2 314 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 PHF21BQ96EK2 531 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 CCDC97Q96F63 343 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-213ENST00000620219 PKMYT1Q99640 499 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 OMDQ99983 421 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 FAM167BQ9BTA0 163 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 NOD2Q9HC29 1040 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 MID2Q9UJV3 735 aa15.87■□□□□ 0.13
CPSF1-213ENST00000620219 FMO4P31512 558 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ARHGAP12Q8IWW6 846 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ECT2Q9H8V3 914 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 LATS2Q9NRM7 1088 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 VPS45Q9NRW7 570 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 MOSPD1Q9UJG1 213 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ASB3Q9Y575 518 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 GPC4O75487 556 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TMCC1O94876 653 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 IGSF6O95976 241 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 RHOP08100 348 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 SERINC3Q13530 473 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 MPPE1Q53F39 396 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 AGGF1Q8N302 714 aaeCLIP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 PBXIP1Q96AQ6 731 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TCEAL4Q96EI5 215 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 DNAJC1Q96KC8 554 aaKnown RBP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 SNX15Q9NRS6 342 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF358Q9NW07 568 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 DCDC2Q9UHG0 476 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ARL5AQ9Y689 179 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 GRM6O15303 877 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 GJB3O75712 270 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 POLR2EP19388 210 aaKnown RBP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 PPARGP37231 505 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 FRA10AC1Q70Z53 315 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 CAMK1DQ8IU85 385 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 AFAP1L2Q8N4X5 818 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ZNF395Q9H8N7 513 aaPredicted RBP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 DYRK4Q9NR20 520 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ZFP69BQ9UJL9 534 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TBC1D3BA6NDS4 549 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 E7ESA3 106 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 CPA3P15088 417 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ALDH18A1P54886 795 aaKnown RBP15.86■□□□□ 0.13
CPSF1-213ENST00000620219 RING1Q06587 406 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TRIM67Q6ZTA4 783 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TCEAL8Q8IYN2 117 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 ANGPTL3Q9Y5C1 460 aa15.86■□□□□ 0.13
CPSF1-213ENST00000620219 TM9SF1O15321 606 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TRIM16O95361 564 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TARSP26639 723 aaKnown RBP15.85■□□□□ 0.13
CPSF1-213ENST00000620219 MAGEA9P43362 315 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 PPP3CCP48454 512 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 OR13C4Q8NGS5 318 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 KCTD4Q8WVF5 259 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 CRISPLD2Q9H0B8 497 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 KIAA1522Q9P206 1035 aaPredicted RBP15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TRIOBPQ9H2D6 2365 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 LEFTY2O00292 366 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 KIAA0355O15063 1070 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TCEA3O75764 348 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 LUC7L3O95232 432 aaKnown RBP15.85■□□□□ 0.13
CPSF1-213ENST00000620219 CNTFP26441 200 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 IRS1P35568 1242 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 SLC12A1Q13621 1099 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 RELL1Q8IUW5 271 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 UMODL1-AS1Q8N2C9 162 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 ARMC5Q96C12 935 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 EGFL8Q99944 293 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 TDP1Q9NUW8 608 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 C1orf232A0A0U1RR37 186 aa15.85■□□□□ 0.13
CPSF1-213ENST00000620219 CLGNO14967 610 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms