RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RHOBTB1O94844 696 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 ENDOD1O94919 500 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 C22orf31O95567 290 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 JUNP05412 331 aaKnown RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 GRM5P41594 1212 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 STT3AP46977 705 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 ENTPD1P49961 510 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 LDLRAP1Q5SW96 308 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 FAM72AQ5TYM5 149 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 FAM72DQ6L9T8 149 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 FASTKD5Q7L8L6 764 aaKnown RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 FAM72BQ86X60 149 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 PTGR2Q8N8N7 351 aaPredicted RBP12.7□□□□□ -0.38
LIG1-221ENST00000613670 ZBTB26Q9HCK0 441 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 IGSF9Q9P2J2 1179 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 GIMAP2Q9UG22 337 aa12.7□□□□□ -0.38
LIG1-221ENST00000613670 SPTLC1O15269 473 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 BCAS2O75934 225 aaPredicted RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 BCL10O95999 233 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 LDLRP01130 860 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 LTA4HP09960 611 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 LINC00032P0C843 101 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 HGFP14210 728 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MYBPC1Q00872 1141 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SGO1Q5FBB7 561 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 PKN3Q6P5Z2 889 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 DNAJC14Q6Y2X3 702 aaPredicted RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 CCDC81Q6ZN84 652 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MIER2Q8N344 545 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MTMR14Q8NCE2 650 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 LZICQ8WZA0 190 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 CATSPERBQ9H7T0 1116 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 CXorf21Q9HAI6 301 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SPC25Q9HBM1 224 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZDHHC7Q9NXF8 308 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 FAM50BQ9Y247 325 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 A0A0J9YYE9 177 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 GOLGA8CPA6NN73 597 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 LRIG2O94898 1065 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 BDNFP23560 247 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZBTB17Q13105 803 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SNAPC2Q13487 334 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 HNRNPDQ14103 355 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZNF235Q14590 738 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 CNSTQ6PJW8 725 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 CHST15Q7LFX5 561 aaPredicted RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZNF554Q86TJ5 538 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZC3HC1Q86WB0 502 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 DCBLD1Q8N8Z6 715 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 C9orf16Q9BUW7 83 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 THUMPD3Q9BV44 507 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 DUSP16Q9BY84 665 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 EIF2B3Q9NR50 452 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 SLC2A6Q9UGQ3 507 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MTF2Q9Y483 593 aaPredicted RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 FADS3Q9Y5Q0 445 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 DAB1O75553 588 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 PFKMP08237 780 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 INCA1Q0VD86 236 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 IKBKEQ14164 716 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 NOMO2Q5JPE7 1267 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 RNF111Q6ZNA4 994 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 PARP8Q8N3A8 854 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 GIPC2Q8TF65 315 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZFP42Q96MM3 310 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZMAT2Q96NC0 199 aaKnown RBP12.69□□□□□ -0.38
LIG1-221ENST00000613670 VAT1Q99536 393 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 GBA3Q9H227 469 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MRGBPQ9NV56 204 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZNF229Q9UJW7 825 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 RNF112Q9ULX5 631 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 PCDHGB4Q9UN71 923 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 PCDHGB5Q9Y5G0 923 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 TLL2Q9Y6L7 1015 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SMIM28A0A1B0GU29 152 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 G3V2L1 256 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 FAM189A1O60320 539 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ARSAP15289 507 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 NCK1P16333 377 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ARRB2P32121 409 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 EPHX2P34913 555 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ZNF423Q2M1K9 1284 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 GPR158Q5T848 1215 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 ARHGAP17Q68EM7 881 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 XKR5Q6UX68 686 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 FRA10AC1Q70Z53 315 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MIB1Q86YT6 1006 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SPNS2Q8IVW8 549 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 EFHBQ8N7U6 833 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 SENP8Q96LD8 212 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 FAM210AQ96ND0 272 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 KLHL32Q96NJ5 620 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 COLEC11Q9BWP8 271 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 MPP6Q9NZW5 540 aa12.69□□□□□ -0.38
LIG1-221ENST00000613670 C9IYK1 514 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 ADM5C9JUS6 153 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 E5RI56 91 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 NDUFS3O75489 264 aa12.68□□□□□ -0.38
LIG1-221ENST00000613670 IPO13O94829 963 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms