RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PIGNO95427 931 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 COMTP21964 271 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 MAT2AP31153 395 aaKnown RBP16.32■□□□□ 0.2
TRIM28-213ENST00000598355 HSPA9P38646 679 aaKnown RBP16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SUOXP51687 545 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 AP1S1P61966 158 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 OVGP1Q12889 678 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 FGL2Q14314 439 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SPA17Q15506 151 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 TAZQ16635 292 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SEL1L3Q68CR1 1132 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SLC9A4Q6AI14 798 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 ALG1LQ6GMV1 187 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 DBX2Q6ZNG2 339 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 TEX26Q8N6G2 289 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 PLD5Q8N7P1 536 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 MFSD2AQ8NA29 543 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 ASB12Q8WXK4 309 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 MAML1Q92585 1016 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 TSGA13Q96PP4 275 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 RNF157Q96PX1 679 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 GAREM1Q9H706 876 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 IL21RQ9HBE5 538 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 GPR27Q9NS67 375 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SALL4Q9UJQ4 1053 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 TFR2Q9UP52 801 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 PCDHGB2Q9Y5G2 931 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 SNX11Q9Y5W9 270 aa16.32■□□□□ 0.2
TRIM28-213ENST00000598355 LRRD1A4D1F6 860 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 TRAFD1O14545 582 aaPredicted RBP16.31■□□□□ 0.2
TRIM28-213ENST00000598355 PSTPIP1O43586 416 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 HNRNPA2B1P22626 353 aaKnown RBP16.31■□□□□ 0.2
TRIM28-213ENST00000598355 RENBPP51606 427 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 RPS21P63220 83 aaKnown RBP16.31■□□□□ 0.2
TRIM28-213ENST00000598355 FOXK2Q01167 660 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 HLA-BQ31612 363 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 PPM1JQ5JR12 505 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 BRAT1Q6PJG6 821 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 SRLQ86TD4 932 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 ZSWIM9Q86XI8 627 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 RHOT1Q8IXI2 618 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 PGBD5Q8N414 524 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 HDAC11Q96DB2 347 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 C1QTNF2Q9BXJ5 285 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 SUV39H2Q9H5I1 410 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 DDX56Q9NY93 547 aaKnown RBP16.31■□□□□ 0.2
TRIM28-213ENST00000598355 DTLQ9NZJ0 730 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 GGT7Q9UJ14 662 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 ITM2BQ9Y287 266 aa16.31■□□□□ 0.2
TRIM28-213ENST00000598355 TDRD6O60522 2096 aaKnown RBP16.31■□□□□ 0.2
TRIM28-213ENST00000598355 MED19A0JLT2 244 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 PJA2O43164 708 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 PCDH8O95206 1070 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 KCNK5O95279 499 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 CEACAM1P13688 526 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 TIMP2P16035 220 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 PRLRP16471 622 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 NXPH1P58417 271 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 GBE1Q04446 702 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 SLC10A2Q12908 348 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 HNRNPDQ14103 355 aaKnown RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 UAP1L1Q3KQV9 507 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 RALGPS1Q5JS13 557 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 GCNT7Q6ZNI0 430 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 ABI3BPQ7Z7G0 1075 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 DENND6BQ8NEG7 585 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 TPCN2Q8NHX9 752 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 FEM1CQ96JP0 617 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 CALR3Q96L12 384 aaKnown RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 NUDCD1Q96RS6 583 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 KLF6Q99612 283 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 BAG1Q99933 345 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-213ENST00000598355 GOLPH3Q9H4A6 298 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 ATP13A3Q9H7F0 1226 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 ERVMER34-1Q9H9K5 563 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 AASDHPPTQ9NRN7 309 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 TM7SF3Q9NS93 570 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 HYOU1Q9Y4L1 999 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 ALG6Q9Y672 507 aa16.3■□□□□ 0.2
TRIM28-213ENST00000598355 SPEGQ15772 3267 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 A0A1B0GTQ1 180 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 H0Y8X5 98 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 HTRA2O43464 458 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SPOPO43791 374 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 PCDHGA12O60330 932 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 DFNA5O60443 496 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SOCS5O75159 536 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 KRT1P04264 644 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 CCNCP24863 283 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SERPINA4P29622 427 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 MMP12P39900 470 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 VAV2P52735 878 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 ZNF235Q14590 738 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 IFI16Q16666 785 aaKnown RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 UGP2Q16851 508 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 TMEM52BQ4KMG9 183 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SLC45A4Q5BKX6 768 aa16.29■□□□□ 0.2
TRIM28-213ENST00000598355 TIGD7Q6NT04 549 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 ADAT2Q7Z6V5 191 aaKnown RBP16.29■□□□□ 0.2
TRIM28-213ENST00000598355 SPATS2Q86XZ4 545 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms