RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 LIASO43766 372 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 MT-CYBP00156 380 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 ADH1BP00325 375 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PRNPP04156 253 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PDHA1P08559 390 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 TIMP2P16035 220 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 NFKB1P19838 968 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ITGB7P26010 798 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 CD86P42081 329 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PTGER3P43115 390 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 KCNJ1P48048 391 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 RENBPP51606 427 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ADPRHP54922 357 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 SKOR1P84550 965 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ZNF33AQ06730 810 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ITKQ08881 620 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 NSUN2Q08J23 767 aaKnown RBP eCLIP9.89□□□□□ -0.83
CLK3-208ENST00000562626 OLIG2Q13516 323 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PLK5Q496M5 336 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 TEX44Q53QW1 395 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PAPD7Q5XG87 772 aaKnown RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 TTC27Q6P3X3 843 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 DARS2Q6PI48 645 aaKnown RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 SYT10Q6XYQ8 523 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ARMCX6Q7L4S7 300 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 TMEFF1Q8IYR6 380 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 SUMF1Q8NBK3 374 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 CCDC110Q8TBZ0 833 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ATOH1Q92858 354 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 TADA1Q96BN2 335 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 ECHDC3Q96DC8 303 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 OXNAD1Q96HP4 312 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 TEKT5Q96M29 485 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 C16orf45Q96MC5 204 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 ORAI3Q9BRQ5 295 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 TMEM121Q9BTD3 319 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 MLPHQ9BV36 600 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 AP1M1Q9BXS5 423 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 FAM126AQ9BYI3 521 aaPredicted RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 CPEB1Q9BZB8 566 aaKnown RBP9.89□□□□□ -0.83
CLK3-208ENST00000562626 SUV39H2Q9H5I1 410 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 EBF2Q9HAK2 575 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 SCUBE2Q9NQ36 999 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 UBP1Q9NZI7 540 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 PIKFYVEQ9Y2I7 2098 aa9.89□□□□□ -0.83
CLK3-208ENST00000562626 LAMA1P25391 3075 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ATXN2Q99700 1313 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 PRR23AA6NEV1 266 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 HACD1B0YJ81 288 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 C1QTNF3-AMACRE9PGA6 284 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 PLRG1O43660 514 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 FZD6O60353 706 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 RNASEH1O60930 286 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 PRLP01236 227 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 IGHV4-34P06331 123 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ACADMP11310 421 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ADRB3P13945 408 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CD6P30203 668 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CETN2P41208 172 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 NBL1P41271 181 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 PTPN5P54829 565 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 AP1S1P61966 158 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ETF1P62495 437 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 ZBTB16Q05516 673 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 SIM2Q14190 667 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 LONRF2Q1L5Z9 754 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 TTC31Q49AM3 519 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 USP39Q53GS9 565 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 HS1BP3Q53T59 392 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ZNF805Q5CZA5 627 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ANKRD20A2Q5SQ80 823 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 FAXCQ5TGI0 409 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ANKRD20A1Q5TYW2 823 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ANKRD20A3Q5VUR7 823 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 PMS2CLQ68D20 193 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 KDM7AQ6ZMT4 941 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 PRR23BQ6ZRT6 265 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 USP30Q70CQ3 517 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 ERN2Q76MJ5 926 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 DSG4Q86SJ6 1040 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CREG2Q8IUH2 290 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CDKL3Q8IVW4 592 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 TAB3Q8N5C8 712 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 FAM71DQ8N9W8 422 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 GANCQ8TET4 914 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 NSMCE1Q8WV22 266 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 IMP4Q96G21 291 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 PBKQ96KB5 322 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CAPZA3Q96KX2 299 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 CCDC114Q96M63 670 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 RBM15Q96T37 977 aaKnown RBP eCLIP9.88□□□□□ -0.833e-6■■■■□ 24.3
CLK3-208ENST00000562626 NAPGQ99747 312 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 OMDQ99983 421 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 POLR1EQ9GZS1 481 aaKnown RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 EPC1Q9H2F5 836 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 GLOD4Q9HC38 313 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 TTC7AQ9ULT0 858 aaPredicted RBP9.88□□□□□ -0.83
CLK3-208ENST00000562626 RAI2Q9Y5P3 530 aa9.88□□□□□ -0.83
CLK3-208ENST00000562626 FAM47DPA6NHR8 397 aa9.87□□□□□ -0.83
CLK3-208ENST00000562626 WNT9AO14904 365 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms