RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	CFHR3	Q02985	330 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	SLC12A1	Q13621	1099 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	KCNB1	Q14721	858 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	AAK1	Q2M2I8	961 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	RNASE12	Q5GAN4	147 aa	Known RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	SUMO4	Q6EEV6	95 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	ACSM6	Q6P461	480 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	OLFML1	Q6UWY5	402 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	VSTM1	Q6UX27	236 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	NEK10	Q6ZWH5	1172 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	CCAR2	Q8N163	923 aa	Known RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	FSIP1	Q8NA03	581 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	SRFBP1	Q8NEF9	429 aa	Known RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	LILRB1	Q8NHL6	650 aa	Predicted RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	CEP70	Q8NHQ1	597 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	RILPL2	Q969X0	211 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	COG8	Q96MW5	612 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	ASB2	Q96Q27	587 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	SNX18	Q96RF0	628 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	TREX2	Q9BQ50	279 aa	Predicted RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	DDX23	Q9BUQ8	820 aa	Known RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	TRIM2	Q9C040	744 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	YY1AP1	Q9H869	796 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	ARL8B	Q9NVJ2	186 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	UTP6	Q9NYH9	597 aa	Known RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	WDR35	Q9P2L0	1181 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	ZNHIT2	Q9UHR6	403 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	HACL1	Q9UJ83	578 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	BLOC1S6	Q9UL45	172 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	CRYL1	Q9Y2S2	319 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	INSL6	Q9Y581	213 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	PCDHA10	Q9Y5I2	948 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	PTPRC	P08575	1304 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	MED23	Q9ULK4	1368 aa		4.36	□□□□□ -1.71
LRRC28-222	ENST00000561431	AGAP5	A6NIR3	686 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431		B4E171	279 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	PLOD2	O00469	737 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NKX2-8	O15522	239 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SEPT4	O43236	478 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	DHH	O43323	396 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ECE2	O60344	883 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ALDOA	P04075	364 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NEFH	P12036	1026 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	RPS2	P15880	293 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	MUT	P22033	750 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	FBL	P22087	321 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	DUSP1	P28562	367 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	STAT1	P42224	750 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	GMPS	P49915	693 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	RARS	P54136	660 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	WDR5	P61964	334 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	COX10	Q12887	443 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	PFKFB3	Q16875	520 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	FAM187B	Q17R55	369 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	GALNTL6	Q49A17	601 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	CERKL	Q49MI3	558 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SLC45A4	Q5BKX6	768 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	FBXO47	Q5MNV8	452 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	GPATCH4	Q5T3I0	446 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	TTC22	Q5TAA0	569 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	STRIP1	Q5VSL9	837 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	TAF3	Q5VWG9	929 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NUGGC	Q68CJ6	796 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	TATDN1	Q6P1N9	297 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	TMCO3	Q6UWJ1	677 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431		Q6ZPA2	131 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	CARNMT1	Q8N4J0	409 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ANKRD44	Q8N8A2	993 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	PNLDC1	Q8NA58	520 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SIMC1	Q8NDZ2	872 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	MNS1	Q8NEH6	495 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	GPR150	Q8NGU9	434 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SPATA18	Q8TC71	538 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SPPL3	Q8TCT6	385 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NPIPB3	Q92617	1050 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	CENPI	Q92674	756 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	USP13	Q92995	863 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	SYAP1	Q96A49	352 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	EDC3	Q96F86	508 aa	Known RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	UBXN10	Q96LJ8	280 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NCAPG	Q9BPX3	1015 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	PAAF1	Q9BRP4	392 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ELOVL1	Q9BW60	279 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	KLK15	Q9H2R5	256 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NOD2	Q9HC29	1040 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ABHD10	Q9NUJ1	306 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ABCF3	Q9NUQ8	709 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	TMLHE	Q9NVH6	421 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	NSMCE4A	Q9NXX6	385 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	FEM1B	Q9UK73	627 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ARAP2	Q8WZ64	1704 aa		4.35	□□□□□ -1.71
LRRC28-222	ENST00000561431	ERICH4	A6NGS2	130 aa		4.34	□□□□□ -1.71
LRRC28-222	ENST00000561431	RRN3P2	A6NIE6	340 aa		4.34	□□□□□ -1.71
LRRC28-222	ENST00000561431	SLC38A8	A6NNN8	435 aa		4.34	□□□□□ -1.71
LRRC28-222	ENST00000561431	TARM1	B6A8C7	271 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms